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TMEM82 (transmembrane protein 82)

Identity

Other alias-
HGNC (Hugo) TMEM82
LocusID (NCBI) 388595
Atlas_Id 74982
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 16068987 and ends at 16074292 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM82   32350
Cards
Entrez_Gene (NCBI)TMEM82  388595  transmembrane protein 82
Aliases
GeneCards (Weizmann)TMEM82
Ensembl hg19 (Hinxton)ENSG00000162460 [Gene_View]  chr1:16068987-16074292 [Contig_View]  TMEM82 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162460 [Gene_View]  chr1:16068987-16074292 [Contig_View]  TMEM82 [Vega]
ICGC DataPortalENSG00000162460
TCGA cBioPortalTMEM82
AceView (NCBI)TMEM82
Genatlas (Paris)TMEM82
WikiGenes388595
SOURCE (Princeton)TMEM82
Genetics Home Reference (NIH)TMEM82
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM82  -     chr1:16068987-16074292 +  1p36.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM82  -     1p36.21   [Description]    (hg38-Dec_2013)
EnsemblTMEM82 - 1p36.21 [CytoView hg19]  TMEM82 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBITMEM82 [Mapview hg19]  TMEM82 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC127706 BC127707 BC137239 BC137240
RefSeq transcript (Entrez)NM_001013641
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)TMEM82
Cluster EST : UnigeneHs.454828 [ NCBI ]
CGAP (NCI)Hs.454828
Alternative Splicing GalleryENSG00000162460
Gene ExpressionTMEM82 [ NCBI-GEO ]   TMEM82 [ EBI - ARRAY_EXPRESS ]   TMEM82 [ SEEK ]   TMEM82 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388595
GTEX Portal (Tissue expression)TMEM82
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJX8
Splice isoforms : SwissVarA0PJX8
PhosPhoSitePlusA0PJX8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM82
DMDM Disease mutations388595
Blocks (Seattle)TMEM82
SuperfamilyA0PJX8
Human Protein AtlasENSG00000162460
Peptide AtlasA0PJX8
HPRD18383
IPIIPI00174997   
Protein Interaction databases
DIP (DOE-UCLA)A0PJX8
IntAct (EBI)A0PJX8
FunCoupENSG00000162460
BioGRIDTMEM82
STRING (EMBL)TMEM82
ZODIACTMEM82
Ontologies - Pathways
QuickGOA0PJX8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM82
Atlas of Cancer Signalling NetworkTMEM82
Wikipedia pathwaysTMEM82
Orthology - Evolution
OrthoDB388595
GeneTree (enSembl)ENSG00000162460
Phylogenetic Trees/Animal Genes : TreeFamTMEM82
HOVERGENA0PJX8
HOGENOMA0PJX8
Homologs : HomoloGeneTMEM82
Homology/Alignments : Family Browser (UCSC)TMEM82
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM82
dbVarTMEM82
ClinVarTMEM82
1000_GenomesTMEM82 
Exome Variant ServerTMEM82
ExAC (Exome Aggregation Consortium)TMEM82 (select the gene name)
Genetic variants : HAPMAP388595
Genomic Variants (DGV)TMEM82 [DGVbeta]
DECIPHER (Syndromes)1:16068987-16074292  ENSG00000162460
CONAN: Copy Number AnalysisTMEM82 
Mutations
ICGC Data PortalTMEM82 
TCGA Data PortalTMEM82 
Broad Tumor PortalTMEM82
OASIS PortalTMEM82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM82  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM82
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM82
DgiDB (Drug Gene Interaction Database)TMEM82
DoCM (Curated mutations)TMEM82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM82 (select a term)
intoGenTMEM82
Cancer3DTMEM82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM82
Genetic Testing Registry TMEM82
NextProtA0PJX8 [Medical]
TSGene388595
GENETestsTMEM82
Huge Navigator TMEM82 [HugePedia]
snp3D : Map Gene to Disease388595
BioCentury BCIQTMEM82
ClinGenTMEM82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388595
Chemical/Pharm GKB GenePA162406636
Clinical trialTMEM82
Miscellaneous
canSAR (ICR)TMEM82 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM82
EVEXTMEM82
GoPubMedTMEM82
iHOPTMEM82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:05 CET 2017

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