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TMEM86A (transmembrane protein 86A)

Identity

Alias_symbol (synonym)FLJ90119
Other alias-
HGNC (Hugo) TMEM86A
LocusID (NCBI) 144110
Atlas_Id 74983
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18698735 and ends at 18704785 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM86A   26890
Cards
Entrez_Gene (NCBI)TMEM86A  144110  transmembrane protein 86A
Aliases
GeneCards (Weizmann)TMEM86A
Ensembl hg19 (Hinxton)ENSG00000151117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151117 [Gene_View]  chr11:18698735-18704785 [Contig_View]  TMEM86A [Vega]
ICGC DataPortalENSG00000151117
TCGA cBioPortalTMEM86A
AceView (NCBI)TMEM86A
Genatlas (Paris)TMEM86A
WikiGenes144110
SOURCE (Princeton)TMEM86A
Genetics Home Reference (NIH)TMEM86A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM86A  -     chr11:18698735-18704785 +  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM86A  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM86A - 11p15.1 [CytoView hg19]  TMEM86A - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBITMEM86A [Mapview hg19]  TMEM86A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074600 BC017073 BC035692 DA047874 HQ448176
RefSeq transcript (Entrez)NM_153347
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM86A
Cluster EST : UnigeneHs.502100 [ NCBI ]
CGAP (NCI)Hs.502100
Alternative Splicing GalleryENSG00000151117
Gene ExpressionTMEM86A [ NCBI-GEO ]   TMEM86A [ EBI - ARRAY_EXPRESS ]   TMEM86A [ SEEK ]   TMEM86A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM86A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144110
GTEX Portal (Tissue expression)TMEM86A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2M4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2M4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2M4
Splice isoforms : SwissVarQ8N2M4
PhosPhoSitePlusQ8N2M4
Domains : Interpro (EBI)YhhN   
Domain families : Pfam (Sanger)YhhN (PF07947)   
Domain families : Pfam (NCBI)pfam07947   
Conserved Domain (NCBI)TMEM86A
DMDM Disease mutations144110
Blocks (Seattle)TMEM86A
SuperfamilyQ8N2M4
Human Protein AtlasENSG00000151117
Peptide AtlasQ8N2M4
HPRD08292
IPIIPI00166430   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2M4
IntAct (EBI)Q8N2M4
FunCoupENSG00000151117
BioGRIDTMEM86A
STRING (EMBL)TMEM86A
ZODIACTMEM86A
Ontologies - Pathways
QuickGOQ8N2M4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM86A
Atlas of Cancer Signalling NetworkTMEM86A
Wikipedia pathwaysTMEM86A
Orthology - Evolution
OrthoDB144110
GeneTree (enSembl)ENSG00000151117
Phylogenetic Trees/Animal Genes : TreeFamTMEM86A
HOVERGENQ8N2M4
HOGENOMQ8N2M4
Homologs : HomoloGeneTMEM86A
Homology/Alignments : Family Browser (UCSC)TMEM86A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM86A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM86A
dbVarTMEM86A
ClinVarTMEM86A
1000_GenomesTMEM86A 
Exome Variant ServerTMEM86A
ExAC (Exome Aggregation Consortium)TMEM86A (select the gene name)
Genetic variants : HAPMAP144110
Genomic Variants (DGV)TMEM86A [DGVbeta]
DECIPHERTMEM86A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM86A 
Mutations
ICGC Data PortalTMEM86A 
TCGA Data PortalTMEM86A 
Broad Tumor PortalTMEM86A
OASIS PortalTMEM86A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM86A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM86A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM86A
DgiDB (Drug Gene Interaction Database)TMEM86A
DoCM (Curated mutations)TMEM86A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM86A (select a term)
intoGenTMEM86A
Cancer3DTMEM86A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM86A
Genetic Testing Registry TMEM86A
NextProtQ8N2M4 [Medical]
TSGene144110
GENETestsTMEM86A
Target ValidationTMEM86A
Huge Navigator TMEM86A [HugePedia]
snp3D : Map Gene to Disease144110
BioCentury BCIQTMEM86A
ClinGenTMEM86A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144110
Chemical/Pharm GKB GenePA142670737
Clinical trialTMEM86A
Miscellaneous
canSAR (ICR)TMEM86A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM86A
EVEXTMEM86A
GoPubMedTMEM86A
iHOPTMEM86A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:06 CEST 2017

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