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TMEM86B (transmembrane protein 86B)

Identity

Alias_symbol (synonym)MGC30208
Other alias-
HGNC (Hugo) TMEM86B
LocusID (NCBI) 255043
Atlas_Id 74984
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55226634 and ends at 55229264 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM86B   28448
Cards
Entrez_Gene (NCBI)TMEM86B  255043  transmembrane protein 86B
Aliases
GeneCards (Weizmann)TMEM86B
Ensembl hg19 (Hinxton)ENSG00000180089 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180089 [Gene_View]  chr19:55226634-55229264 [Contig_View]  TMEM86B [Vega]
ICGC DataPortalENSG00000180089
TCGA cBioPortalTMEM86B
AceView (NCBI)TMEM86B
Genatlas (Paris)TMEM86B
WikiGenes255043
SOURCE (Princeton)TMEM86B
Genetics Home Reference (NIH)TMEM86B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM86B  -     chr19:55226634-55229264 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM86B  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblTMEM86B - 19q13.42 [CytoView hg19]  TMEM86B - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBITMEM86B [Mapview hg19]  TMEM86B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA953377 AK126545 BC023000 BC033193 HQ447167
RefSeq transcript (Entrez)NM_173804
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM86B
Cluster EST : UnigeneHs.135215 [ NCBI ]
CGAP (NCI)Hs.135215
Alternative Splicing GalleryENSG00000180089
Gene ExpressionTMEM86B [ NCBI-GEO ]   TMEM86B [ EBI - ARRAY_EXPRESS ]   TMEM86B [ SEEK ]   TMEM86B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM86B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255043
GTEX Portal (Tissue expression)TMEM86B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N661   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N661  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N661
Splice isoforms : SwissVarQ8N661
PhosPhoSitePlusQ8N661
Domains : Interpro (EBI)YhhN   
Domain families : Pfam (Sanger)YhhN (PF07947)   
Domain families : Pfam (NCBI)pfam07947   
Conserved Domain (NCBI)TMEM86B
DMDM Disease mutations255043
Blocks (Seattle)TMEM86B
SuperfamilyQ8N661
Human Protein AtlasENSG00000180089
Peptide AtlasQ8N661
HPRD14540
IPIIPI00297119   
Protein Interaction databases
DIP (DOE-UCLA)Q8N661
IntAct (EBI)Q8N661
FunCoupENSG00000180089
BioGRIDTMEM86B
STRING (EMBL)TMEM86B
ZODIACTMEM86B
Ontologies - Pathways
QuickGOQ8N661
Ontology : AmiGOprotein binding  cytoplasm  endoplasmic reticulum membrane  membrane  integral component of membrane  ether hydrolase activity  phosphatidylcholine acyl-chain remodeling  ether lipid metabolic process  alkenylglycerophosphocholine hydrolase activity  alkenylglycerophosphoethanolamine hydrolase activity  
Ontology : EGO-EBIprotein binding  cytoplasm  endoplasmic reticulum membrane  membrane  integral component of membrane  ether hydrolase activity  phosphatidylcholine acyl-chain remodeling  ether lipid metabolic process  alkenylglycerophosphocholine hydrolase activity  alkenylglycerophosphoethanolamine hydrolase activity  
NDEx NetworkTMEM86B
Atlas of Cancer Signalling NetworkTMEM86B
Wikipedia pathwaysTMEM86B
Orthology - Evolution
OrthoDB255043
GeneTree (enSembl)ENSG00000180089
Phylogenetic Trees/Animal Genes : TreeFamTMEM86B
HOVERGENQ8N661
HOGENOMQ8N661
Homologs : HomoloGeneTMEM86B
Homology/Alignments : Family Browser (UCSC)TMEM86B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM86B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM86B
dbVarTMEM86B
ClinVarTMEM86B
1000_GenomesTMEM86B 
Exome Variant ServerTMEM86B
ExAC (Exome Aggregation Consortium)TMEM86B (select the gene name)
Genetic variants : HAPMAP255043
Genomic Variants (DGV)TMEM86B [DGVbeta]
DECIPHERTMEM86B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM86B 
Mutations
ICGC Data PortalTMEM86B 
TCGA Data PortalTMEM86B 
Broad Tumor PortalTMEM86B
OASIS PortalTMEM86B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM86B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM86B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM86B
DgiDB (Drug Gene Interaction Database)TMEM86B
DoCM (Curated mutations)TMEM86B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM86B (select a term)
intoGenTMEM86B
Cancer3DTMEM86B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM86B
Genetic Testing Registry TMEM86B
NextProtQ8N661 [Medical]
TSGene255043
GENETestsTMEM86B
Target ValidationTMEM86B
Huge Navigator TMEM86B [HugePedia]
snp3D : Map Gene to Disease255043
BioCentury BCIQTMEM86B
ClinGenTMEM86B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255043
Chemical/Pharm GKB GenePA142670738
Clinical trialTMEM86B
Miscellaneous
canSAR (ICR)TMEM86B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM86B
EVEXTMEM86B
GoPubMedTMEM86B
iHOPTMEM86B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:07 CEST 2017

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