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TMEM87A (transmembrane protein 87A)

Identity

Alias_symbol (synonym)DKFZP564G2022
Other alias-
HGNC (Hugo) TMEM87A
LocusID (NCBI) 25963
Atlas_Id 74985
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 42549095 and ends at 42565782 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EVI5 (1p22.1) / TMEM87A (15q15.1)FCMR (1q32.1) / TMEM87A (15q15.1)GOLGA4 (3p22.2) / TMEM87A (15q15.1)
TMEM87A (15q15.1) / PTPRN2 (7q36.3)TMEM87A (15q15.1) / TMEM87A (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM87A   24522
Cards
Entrez_Gene (NCBI)TMEM87A  25963  transmembrane protein 87A
Aliases
GeneCards (Weizmann)TMEM87A
Ensembl hg19 (Hinxton)ENSG00000103978 [Gene_View]  chr15:42549095-42565782 [Contig_View]  TMEM87A [Vega]
Ensembl hg38 (Hinxton)ENSG00000103978 [Gene_View]  chr15:42549095-42565782 [Contig_View]  TMEM87A [Vega]
ICGC DataPortalENSG00000103978
TCGA cBioPortalTMEM87A
AceView (NCBI)TMEM87A
Genatlas (Paris)TMEM87A
WikiGenes25963
SOURCE (Princeton)TMEM87A
Genetics Home Reference (NIH)TMEM87A
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM87A  -     chr15:42549095-42565782 -  15q15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM87A  -     15q15.1   [Description]    (hg38-Dec_2013)
EnsemblTMEM87A - 15q15.1 [CytoView hg19]  TMEM87A - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBITMEM87A [Mapview hg19]  TMEM87A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF129927 AF132733 AI023965 AI434902 AK023569
RefSeq transcript (Entrez)NM_001110503 NM_001286487 NM_015497
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)TMEM87A
Cluster EST : UnigeneHs.744941 [ NCBI ]
CGAP (NCI)Hs.744941
Alternative Splicing GalleryENSG00000103978
Gene ExpressionTMEM87A [ NCBI-GEO ]   TMEM87A [ EBI - ARRAY_EXPRESS ]   TMEM87A [ SEEK ]   TMEM87A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM87A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25963
GTEX Portal (Tissue expression)TMEM87A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBN3
Splice isoforms : SwissVarQ8NBN3
PhosPhoSitePlusQ8NBN3
Domains : Interpro (EBI)TM_rcpt_euk   
Domain families : Pfam (Sanger)Lung_7-TM_R (PF06814)   
Domain families : Pfam (NCBI)pfam06814   
Conserved Domain (NCBI)TMEM87A
DMDM Disease mutations25963
Blocks (Seattle)TMEM87A
SuperfamilyQ8NBN3
Human Protein AtlasENSG00000103978
Peptide AtlasQ8NBN3
IPIIPI00783698   IPI00106689   IPI00816013   IPI01013197   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBN3
IntAct (EBI)Q8NBN3
FunCoupENSG00000103978
BioGRIDTMEM87A
STRING (EMBL)TMEM87A
ZODIACTMEM87A
Ontologies - Pathways
QuickGOQ8NBN3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM87A
Atlas of Cancer Signalling NetworkTMEM87A
Wikipedia pathwaysTMEM87A
Orthology - Evolution
OrthoDB25963
GeneTree (enSembl)ENSG00000103978
Phylogenetic Trees/Animal Genes : TreeFamTMEM87A
HOVERGENQ8NBN3
HOGENOMQ8NBN3
Homologs : HomoloGeneTMEM87A
Homology/Alignments : Family Browser (UCSC)TMEM87A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM87A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM87A
dbVarTMEM87A
ClinVarTMEM87A
1000_GenomesTMEM87A 
Exome Variant ServerTMEM87A
ExAC (Exome Aggregation Consortium)TMEM87A (select the gene name)
Genetic variants : HAPMAP25963
Genomic Variants (DGV)TMEM87A [DGVbeta]
DECIPHER (Syndromes)15:42549095-42565782  ENSG00000103978
CONAN: Copy Number AnalysisTMEM87A 
Mutations
ICGC Data PortalTMEM87A 
TCGA Data PortalTMEM87A 
Broad Tumor PortalTMEM87A
OASIS PortalTMEM87A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM87A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM87A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM87A
DgiDB (Drug Gene Interaction Database)TMEM87A
DoCM (Curated mutations)TMEM87A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM87A (select a term)
intoGenTMEM87A
Cancer3DTMEM87A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM87A
Genetic Testing Registry TMEM87A
NextProtQ8NBN3 [Medical]
TSGene25963
GENETestsTMEM87A
Huge Navigator TMEM87A [HugePedia]
snp3D : Map Gene to Disease25963
BioCentury BCIQTMEM87A
ClinGenTMEM87A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25963
Chemical/Pharm GKB GenePA142670739
Clinical trialTMEM87A
Miscellaneous
canSAR (ICR)TMEM87A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM87A
EVEXTMEM87A
GoPubMedTMEM87A
iHOPTMEM87A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:49:06 CET 2017

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