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TMEM87B (transmembrane protein 87B)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM87B
HGNC Alias symbFLJ14681
LocusID (NCBI) 84910
Atlas_Id 74986
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 112055269 and ends at 112119314 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RND3 (2q23.3) / TMEM87B (2q13)TMEM87B (2q13) / MERTK (2q13)TMEM87B (2q13) / SLC1A3 (5p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM87B   25913
Cards
Entrez_Gene (NCBI)TMEM87B    transmembrane protein 87B
Aliases
GeneCards (Weizmann)TMEM87B
Ensembl hg19 (Hinxton)ENSG00000153214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153214 [Gene_View]  ENSG00000153214 [Sequence]  chr2:112055269-112119314 [Contig_View]  TMEM87B [Vega]
ICGC DataPortalENSG00000153214
TCGA cBioPortalTMEM87B
AceView (NCBI)TMEM87B
Genatlas (Paris)TMEM87B
SOURCE (Princeton)TMEM87B
Genetics Home Reference (NIH)TMEM87B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM87B  -     chr2:112055269-112119314 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM87B  -     2q13   [Description]    (hg19-Feb_2009)
GoldenPathTMEM87B - 2q13 [CytoView hg19]  TMEM87B - 2q13 [CytoView hg38]
ImmunoBaseENSG00000153214
Genome Data Viewer NCBITMEM87B [Mapview hg19]  
OMIM617203   
Gene and transcription
Genbank (Entrez)AI806006 AK027587 AK074243 AK290294 AY429534
RefSeq transcript (Entrez)NM_001329914 NM_032824
Consensus coding sequences : CCDS (NCBI)TMEM87B
Gene ExpressionTMEM87B [ NCBI-GEO ]   TMEM87B [ EBI - ARRAY_EXPRESS ]   TMEM87B [ SEEK ]   TMEM87B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM87B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM87B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84910
GTEX Portal (Tissue expression)TMEM87B
Human Protein AtlasENSG00000153214-TMEM87B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96K49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96K49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96K49
PhosPhoSitePlusQ96K49
Domains : Interpro (EBI)GPR107/GPR108-like   
Domain families : Pfam (Sanger)Lung_7-TM_R (PF06814)   
Domain families : Pfam (NCBI)pfam06814   
Conserved Domain (NCBI)TMEM87B
SuperfamilyQ96K49
AlphaFold pdb e-kbQ96K49   
Human Protein Atlas [tissue]ENSG00000153214-TMEM87B [tissue]
HPRD07867
Protein Interaction databases
DIP (DOE-UCLA)Q96K49
IntAct (EBI)Q96K49
BioGRIDTMEM87B
STRING (EMBL)TMEM87B
ZODIACTMEM87B
Ontologies - Pathways
QuickGOQ96K49
Ontology : AmiGOGolgi membrane  Golgi apparatus  cytosol  transport  membrane  integral component of membrane  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  cytosol  transport  membrane  integral component of membrane  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  
NDEx NetworkTMEM87B
Atlas of Cancer Signalling NetworkTMEM87B
Wikipedia pathwaysTMEM87B
Orthology - Evolution
OrthoDB84910
GeneTree (enSembl)ENSG00000153214
Phylogenetic Trees/Animal Genes : TreeFamTMEM87B
Homologs : HomoloGeneTMEM87B
Homology/Alignments : Family Browser (UCSC)TMEM87B
Gene fusions - Rearrangements
Fusion : QuiverTMEM87B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM87B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM87B
dbVarTMEM87B
ClinVarTMEM87B
MonarchTMEM87B
1000_GenomesTMEM87B 
Exome Variant ServerTMEM87B
GNOMAD BrowserENSG00000153214
Varsome BrowserTMEM87B
ACMGTMEM87B variants
VarityQ96K49
Genomic Variants (DGV)TMEM87B [DGVbeta]
DECIPHERTMEM87B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM87B 
Mutations
ICGC Data PortalTMEM87B 
TCGA Data PortalTMEM87B 
Broad Tumor PortalTMEM87B
OASIS PortalTMEM87B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM87B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM87B
Mutations and Diseases : HGMDTMEM87B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM87B
DgiDB (Drug Gene Interaction Database)TMEM87B
DoCM (Curated mutations)TMEM87B
CIViC (Clinical Interpretations of Variants in Cancer)TMEM87B
Cancer3DTMEM87B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617203   
Orphanet
DisGeNETTMEM87B
MedgenTMEM87B
Genetic Testing Registry TMEM87B
NextProtQ96K49 [Medical]
GENETestsTMEM87B
Target ValidationTMEM87B
Huge Navigator TMEM87B [HugePedia]
ClinGenTMEM87B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM87B
Protein Interactions : CTDTMEM87B
Pharm GKB GenePA142670740
PharosQ96K49
Clinical trialTMEM87B
Miscellaneous
canSAR (ICR)TMEM87B
HarmonizomeTMEM87B
DataMed IndexTMEM87B
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM87B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:22 CEST 2021

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