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TMEM87B (transmembrane protein 87B)

Identity

Alias_symbol (synonym)FLJ14681
Other alias-
HGNC (Hugo) TMEM87B
LocusID (NCBI) 84910
Atlas_Id 74986
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 112055223 and ends at 112119318 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RND3 (2q23.3) / TMEM87B (2q13)TMEM87B (2q13) / MERTK (2q13)TMEM87B (2q13) / SLC1A3 (5p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM87B   25913
Cards
Entrez_Gene (NCBI)TMEM87B  84910  transmembrane protein 87B
Aliases
GeneCards (Weizmann)TMEM87B
Ensembl hg19 (Hinxton)ENSG00000153214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153214 [Gene_View]  chr2:112055223-112119318 [Contig_View]  TMEM87B [Vega]
ICGC DataPortalENSG00000153214
TCGA cBioPortalTMEM87B
AceView (NCBI)TMEM87B
Genatlas (Paris)TMEM87B
WikiGenes84910
SOURCE (Princeton)TMEM87B
Genetics Home Reference (NIH)TMEM87B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM87B  -     chr2:112055223-112119318 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM87B  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblTMEM87B - 2q13 [CytoView hg19]  TMEM87B - 2q13 [CytoView hg38]
Mapping of homologs : NCBITMEM87B [Mapview hg19]  TMEM87B [Mapview hg38]
OMIM617203   
Gene and transcription
Genbank (Entrez)AI806006 AK027587 AK074243 AK290294 AY429534
RefSeq transcript (Entrez)NM_001329914 NM_032824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM87B
Cluster EST : UnigeneHs.656298 [ NCBI ]
CGAP (NCI)Hs.656298
Alternative Splicing GalleryENSG00000153214
Gene ExpressionTMEM87B [ NCBI-GEO ]   TMEM87B [ EBI - ARRAY_EXPRESS ]   TMEM87B [ SEEK ]   TMEM87B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM87B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84910
GTEX Portal (Tissue expression)TMEM87B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96K49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96K49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96K49
Splice isoforms : SwissVarQ96K49
PhosPhoSitePlusQ96K49
Domains : Interpro (EBI)GPR107-like   
Domain families : Pfam (Sanger)Lung_7-TM_R (PF06814)   
Domain families : Pfam (NCBI)pfam06814   
Conserved Domain (NCBI)TMEM87B
DMDM Disease mutations84910
Blocks (Seattle)TMEM87B
SuperfamilyQ96K49
Human Protein AtlasENSG00000153214
Peptide AtlasQ96K49
HPRD07867
IPIIPI00783380   IPI00847605   IPI00916241   
Protein Interaction databases
DIP (DOE-UCLA)Q96K49
IntAct (EBI)Q96K49
FunCoupENSG00000153214
BioGRIDTMEM87B
STRING (EMBL)TMEM87B
ZODIACTMEM87B
Ontologies - Pathways
QuickGOQ96K49
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM87B
Atlas of Cancer Signalling NetworkTMEM87B
Wikipedia pathwaysTMEM87B
Orthology - Evolution
OrthoDB84910
GeneTree (enSembl)ENSG00000153214
Phylogenetic Trees/Animal Genes : TreeFamTMEM87B
HOVERGENQ96K49
HOGENOMQ96K49
Homologs : HomoloGeneTMEM87B
Homology/Alignments : Family Browser (UCSC)TMEM87B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM87B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM87B
dbVarTMEM87B
ClinVarTMEM87B
1000_GenomesTMEM87B 
Exome Variant ServerTMEM87B
ExAC (Exome Aggregation Consortium)TMEM87B (select the gene name)
Genetic variants : HAPMAP84910
Genomic Variants (DGV)TMEM87B [DGVbeta]
DECIPHERTMEM87B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM87B 
Mutations
ICGC Data PortalTMEM87B 
TCGA Data PortalTMEM87B 
Broad Tumor PortalTMEM87B
OASIS PortalTMEM87B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM87B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM87B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM87B
DgiDB (Drug Gene Interaction Database)TMEM87B
DoCM (Curated mutations)TMEM87B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM87B (select a term)
intoGenTMEM87B
Cancer3DTMEM87B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617203   
Orphanet
MedgenTMEM87B
Genetic Testing Registry TMEM87B
NextProtQ96K49 [Medical]
TSGene84910
GENETestsTMEM87B
Target ValidationTMEM87B
Huge Navigator TMEM87B [HugePedia]
snp3D : Map Gene to Disease84910
BioCentury BCIQTMEM87B
ClinGenTMEM87B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84910
Chemical/Pharm GKB GenePA142670740
Clinical trialTMEM87B
Miscellaneous
canSAR (ICR)TMEM87B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM87B
EVEXTMEM87B
GoPubMedTMEM87B
iHOPTMEM87B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:31 CEST 2017

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