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TMEM88 (transmembrane protein 88)

Identity

Alias_symbol (synonym)MGC71744
FLJ20025
Other alias-
HGNC (Hugo) TMEM88
LocusID (NCBI) 92162
Atlas_Id 52942
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7855066 and ends at 7856099 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to(writa A full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM88   32371
Cards
Entrez_Gene (NCBI)TMEM88  92162  transmembrane protein 88
Aliases
GeneCards (Weizmann)TMEM88
Ensembl hg19 (Hinxton)ENSG00000167874 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167874 [Gene_View]  chr17:7855066-7856099 [Contig_View]  TMEM88 [Vega]
ICGC DataPortalENSG00000167874
TCGA cBioPortalTMEM88
AceView (NCBI)TMEM88
Genatlas (Paris)TMEM88
WikiGenes92162
SOURCE (Princeton)TMEM88
Genetics Home Reference (NIH)TMEM88
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM88  -     chr17:7855066-7856099 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM88  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM88 - 17p13.1 [CytoView hg19]  TMEM88 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBITMEM88 [Mapview hg19]  TMEM88 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000032 BC057812
RefSeq transcript (Entrez)NM_001319941 NM_203411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM88
Cluster EST : UnigeneHs.389669 [ NCBI ]
CGAP (NCI)Hs.389669
Alternative Splicing GalleryENSG00000167874
Gene ExpressionTMEM88 [ NCBI-GEO ]   TMEM88 [ EBI - ARRAY_EXPRESS ]   TMEM88 [ SEEK ]   TMEM88 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM88 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92162
GTEX Portal (Tissue expression)TMEM88
Human Protein AtlasENSG00000167874-TMEM88 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEY1
Splice isoforms : SwissVarQ6PEY1
PhosPhoSitePlusQ6PEY1
Domains : Interpro (EBI)TMEM88    TMEM88A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM88
DMDM Disease mutations92162
Blocks (Seattle)TMEM88
SuperfamilyQ6PEY1
Human Protein Atlas [tissue]ENSG00000167874-TMEM88 [tissue]
Peptide AtlasQ6PEY1
HPRD17438
IPIIPI00011480   
Protein Interaction databases
DIP (DOE-UCLA)Q6PEY1
IntAct (EBI)Q6PEY1
FunCoupENSG00000167874
BioGRIDTMEM88
STRING (EMBL)TMEM88
ZODIACTMEM88
Ontologies - Pathways
QuickGOQ6PEY1
Ontology : AmiGOprotein binding  cytosol  plasma membrane  multicellular organism development  integral component of membrane  Wnt signaling pathway  PDZ domain binding  protein stabilization  protein localization to plasma membrane  negative regulation of canonical Wnt signaling pathway  negative regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIprotein binding  cytosol  plasma membrane  multicellular organism development  integral component of membrane  Wnt signaling pathway  PDZ domain binding  protein stabilization  protein localization to plasma membrane  negative regulation of canonical Wnt signaling pathway  negative regulation of canonical Wnt signaling pathway  
NDEx NetworkTMEM88
Atlas of Cancer Signalling NetworkTMEM88
Wikipedia pathwaysTMEM88
Orthology - Evolution
OrthoDB92162
GeneTree (enSembl)ENSG00000167874
Phylogenetic Trees/Animal Genes : TreeFamTMEM88
HOVERGENQ6PEY1
HOGENOMQ6PEY1
Homologs : HomoloGeneTMEM88
Homology/Alignments : Family Browser (UCSC)TMEM88
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM88
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM88 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM88
dbVarTMEM88
ClinVarTMEM88
1000_GenomesTMEM88 
Exome Variant ServerTMEM88
ExAC (Exome Aggregation Consortium)ENSG00000167874
GNOMAD BrowserENSG00000167874
Genetic variants : HAPMAP92162
Genomic Variants (DGV)TMEM88 [DGVbeta]
DECIPHERTMEM88 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM88 
Mutations
ICGC Data PortalTMEM88 
TCGA Data PortalTMEM88 
Broad Tumor PortalTMEM88
OASIS PortalTMEM88 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM88  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM88
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM88
DgiDB (Drug Gene Interaction Database)TMEM88
DoCM (Curated mutations)TMEM88 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM88 (select a term)
intoGenTMEM88
Cancer3DTMEM88(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM88
MedgenTMEM88
Genetic Testing Registry TMEM88
NextProtQ6PEY1 [Medical]
TSGene92162
GENETestsTMEM88
Target ValidationTMEM88
Huge Navigator TMEM88 [HugePedia]
snp3D : Map Gene to Disease92162
BioCentury BCIQTMEM88
ClinGenTMEM88
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92162
Chemical/Pharm GKB GenePA142670741
Clinical trialTMEM88
Miscellaneous
canSAR (ICR)TMEM88 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM88
EVEXTMEM88
GoPubMedTMEM88
iHOPTMEM88
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:38:53 CET 2017

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