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TMEM88B (transmembrane protein 88B)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM88B
LocusID (NCBI) 643965
Atlas_Id 74987
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1426128 and ends at 1427787 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM88B   37099
Cards
Entrez_Gene (NCBI)TMEM88B    transmembrane protein 88B
Aliases
GeneCards (Weizmann)TMEM88B
Ensembl hg19 (Hinxton)ENSG00000205116 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205116 [Gene_View]  ENSG00000205116 [Sequence]  chr1:1426128-1427787 [Contig_View]  TMEM88B [Vega]
ICGC DataPortalENSG00000205116
TCGA cBioPortalTMEM88B
AceView (NCBI)TMEM88B
Genatlas (Paris)TMEM88B
SOURCE (Princeton)TMEM88B
Genetics Home Reference (NIH)TMEM88B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM88B  -     chr1:1426128-1427787 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM88B  -     1p36.33   [Description]    (hg19-Feb_2009)
GoldenPathTMEM88B - 1p36.33 [CytoView hg19]  TMEM88B - 1p36.33 [CytoView hg38]
ImmunoBaseENSG00000205116
Genome Data Viewer NCBITMEM88B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001146685
Consensus coding sequences : CCDS (NCBI)TMEM88B
Gene ExpressionTMEM88B [ NCBI-GEO ]   TMEM88B [ EBI - ARRAY_EXPRESS ]   TMEM88B [ SEEK ]   TMEM88B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM88B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM88B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643965
GTEX Portal (Tissue expression)TMEM88B
Human Protein AtlasENSG00000205116-TMEM88B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKF7
PhosPhoSitePlusA6NKF7
Domains : Interpro (EBI)TMEM88   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM88B
SuperfamilyA6NKF7
AlphaFold pdb e-kbA6NKF7   
Human Protein Atlas [tissue]ENSG00000205116-TMEM88B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NKF7
IntAct (EBI)A6NKF7
BioGRIDTMEM88B
STRING (EMBL)TMEM88B
ZODIACTMEM88B
Ontologies - Pathways
QuickGOA6NKF7
Ontology : AmiGOplasma membrane  integral component of membrane  PDZ domain binding  
Ontology : EGO-EBIplasma membrane  integral component of membrane  PDZ domain binding  
NDEx NetworkTMEM88B
Atlas of Cancer Signalling NetworkTMEM88B
Wikipedia pathwaysTMEM88B
Orthology - Evolution
OrthoDB643965
GeneTree (enSembl)ENSG00000205116
Phylogenetic Trees/Animal Genes : TreeFamTMEM88B
Homologs : HomoloGeneTMEM88B
Homology/Alignments : Family Browser (UCSC)TMEM88B
Gene fusions - Rearrangements
Fusion : QuiverTMEM88B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM88B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM88B
dbVarTMEM88B
ClinVarTMEM88B
MonarchTMEM88B
1000_GenomesTMEM88B 
Exome Variant ServerTMEM88B
GNOMAD BrowserENSG00000205116
Varsome BrowserTMEM88B
ACMGTMEM88B variants
VarityA6NKF7
Genomic Variants (DGV)TMEM88B [DGVbeta]
DECIPHERTMEM88B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM88B 
Mutations
ICGC Data PortalTMEM88B 
TCGA Data PortalTMEM88B 
Broad Tumor PortalTMEM88B
OASIS PortalTMEM88B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM88B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM88B
Mutations and Diseases : HGMDTMEM88B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM88B
DgiDB (Drug Gene Interaction Database)TMEM88B
DoCM (Curated mutations)TMEM88B
CIViC (Clinical Interpretations of Variants in Cancer)TMEM88B
Cancer3DTMEM88B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM88B
MedgenTMEM88B
Genetic Testing Registry TMEM88B
NextProtA6NKF7 [Medical]
GENETestsTMEM88B
Target ValidationTMEM88B
Huge Navigator TMEM88B [HugePedia]
ClinGenTMEM88B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM88B
Protein Interactions : CTDTMEM88B
Pharm GKB GenePA165752745
PharosA6NKF7
Clinical trialTMEM88B
Miscellaneous
canSAR (ICR)TMEM88B
HarmonizomeTMEM88B
DataMed IndexTMEM88B
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM88B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:22 CEST 2021

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