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TMEM88B (transmembrane protein 88B)

Identity

Other alias-
HGNC (Hugo) TMEM88B
LocusID (NCBI) 643965
Atlas_Id 74987
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1426128 and ends at 1427787 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM88B   37099
Cards
Entrez_Gene (NCBI)TMEM88B  643965  transmembrane protein 88B
Aliases
GeneCards (Weizmann)TMEM88B
Ensembl hg19 (Hinxton)ENSG00000205116 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205116 [Gene_View]  chr1:1426128-1427787 [Contig_View]  TMEM88B [Vega]
ICGC DataPortalENSG00000205116
TCGA cBioPortalTMEM88B
AceView (NCBI)TMEM88B
Genatlas (Paris)TMEM88B
WikiGenes643965
SOURCE (Princeton)TMEM88B
Genetics Home Reference (NIH)TMEM88B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM88B  -     chr1:1426128-1427787 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM88B  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblTMEM88B - 1p36.33 [CytoView hg19]  TMEM88B - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBITMEM88B [Mapview hg19]  TMEM88B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001146685
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM88B
Cluster EST : UnigeneHs.729765 [ NCBI ]
CGAP (NCI)Hs.729765
Alternative Splicing GalleryENSG00000205116
Gene ExpressionTMEM88B [ NCBI-GEO ]   TMEM88B [ EBI - ARRAY_EXPRESS ]   TMEM88B [ SEEK ]   TMEM88B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM88B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643965
GTEX Portal (Tissue expression)TMEM88B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKF7
Splice isoforms : SwissVarA6NKF7
PhosPhoSitePlusA6NKF7
Domains : Interpro (EBI)TMEM88   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM88B
DMDM Disease mutations643965
Blocks (Seattle)TMEM88B
SuperfamilyA6NKF7
Human Protein AtlasENSG00000205116
Peptide AtlasA6NKF7
IPIIPI00737941   
Protein Interaction databases
DIP (DOE-UCLA)A6NKF7
IntAct (EBI)A6NKF7
FunCoupENSG00000205116
BioGRIDTMEM88B
STRING (EMBL)TMEM88B
ZODIACTMEM88B
Ontologies - Pathways
QuickGOA6NKF7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM88B
Atlas of Cancer Signalling NetworkTMEM88B
Wikipedia pathwaysTMEM88B
Orthology - Evolution
OrthoDB643965
GeneTree (enSembl)ENSG00000205116
Phylogenetic Trees/Animal Genes : TreeFamTMEM88B
HOVERGENA6NKF7
HOGENOMA6NKF7
Homologs : HomoloGeneTMEM88B
Homology/Alignments : Family Browser (UCSC)TMEM88B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM88B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM88B
dbVarTMEM88B
ClinVarTMEM88B
1000_GenomesTMEM88B 
Exome Variant ServerTMEM88B
ExAC (Exome Aggregation Consortium)TMEM88B (select the gene name)
Genetic variants : HAPMAP643965
Genomic Variants (DGV)TMEM88B [DGVbeta]
DECIPHERTMEM88B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM88B 
Mutations
ICGC Data PortalTMEM88B 
TCGA Data PortalTMEM88B 
Broad Tumor PortalTMEM88B
OASIS PortalTMEM88B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM88B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM88B
DgiDB (Drug Gene Interaction Database)TMEM88B
DoCM (Curated mutations)TMEM88B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM88B (select a term)
intoGenTMEM88B
Cancer3DTMEM88B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM88B
Genetic Testing Registry TMEM88B
NextProtA6NKF7 [Medical]
TSGene643965
GENETestsTMEM88B
Target ValidationTMEM88B
Huge Navigator TMEM88B [HugePedia]
snp3D : Map Gene to Disease643965
BioCentury BCIQTMEM88B
ClinGenTMEM88B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643965
Chemical/Pharm GKB GenePA165752745
Clinical trialTMEM88B
Miscellaneous
canSAR (ICR)TMEM88B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM88B
EVEXTMEM88B
GoPubMedTMEM88B
iHOPTMEM88B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:31 CEST 2017

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