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TMEM89 (transmembrane protein 89)

Identity

Other alias-
HGNC (Hugo) TMEM89
LocusID (NCBI) 440955
Atlas_Id 74988
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48620842 and ends at 48621756 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM89   32372
Cards
Entrez_Gene (NCBI)TMEM89  440955  transmembrane protein 89
Aliases
GeneCards (Weizmann)TMEM89
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:48620842-48621756 [Contig_View]  TMEM89 [Vega]
TCGA cBioPortalTMEM89
AceView (NCBI)TMEM89
Genatlas (Paris)TMEM89
WikiGenes440955
SOURCE (Princeton)TMEM89
Genetics Home Reference (NIH)TMEM89
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM89  -     chr3:48620842-48621756 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM89  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblTMEM89 - 3p21.31 [CytoView hg19]  TMEM89 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBITMEM89 [Mapview hg19]  TMEM89 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC133034 BC133036
RefSeq transcript (Entrez)NM_001008269
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM89
Cluster EST : UnigeneHs.631922 [ NCBI ]
CGAP (NCI)Hs.631922
Gene ExpressionTMEM89 [ NCBI-GEO ]   TMEM89 [ EBI - ARRAY_EXPRESS ]   TMEM89 [ SEEK ]   TMEM89 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM89 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440955
GTEX Portal (Tissue expression)TMEM89
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RUT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RUT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RUT3
Splice isoforms : SwissVarA2RUT3
PhosPhoSitePlusA2RUT3
Domains : Interpro (EBI)TMEM89   
Domain families : Pfam (Sanger)TMEM89 (PF15098)   
Domain families : Pfam (NCBI)pfam15098   
Conserved Domain (NCBI)TMEM89
DMDM Disease mutations440955
Blocks (Seattle)TMEM89
SuperfamilyA2RUT3
Peptide AtlasA2RUT3
HPRD17401
IPIIPI00455573   
Protein Interaction databases
DIP (DOE-UCLA)A2RUT3
IntAct (EBI)A2RUT3
BioGRIDTMEM89
STRING (EMBL)TMEM89
ZODIACTMEM89
Ontologies - Pathways
QuickGOA2RUT3
Ontology : AmiGOnucleus  integral component of membrane  
Ontology : EGO-EBInucleus  integral component of membrane  
NDEx NetworkTMEM89
Atlas of Cancer Signalling NetworkTMEM89
Wikipedia pathwaysTMEM89
Orthology - Evolution
OrthoDB440955
Phylogenetic Trees/Animal Genes : TreeFamTMEM89
HOVERGENA2RUT3
HOGENOMA2RUT3
Homologs : HomoloGeneTMEM89
Homology/Alignments : Family Browser (UCSC)TMEM89
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM89
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM89 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM89
dbVarTMEM89
ClinVarTMEM89
1000_GenomesTMEM89 
Exome Variant ServerTMEM89
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP440955
Genomic Variants (DGV)TMEM89 [DGVbeta]
DECIPHERTMEM89 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM89 
Mutations
ICGC Data PortalTMEM89 
TCGA Data PortalTMEM89 
Broad Tumor PortalTMEM89
OASIS PortalTMEM89 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM89  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM89
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM89
DgiDB (Drug Gene Interaction Database)TMEM89
DoCM (Curated mutations)TMEM89 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM89 (select a term)
intoGenTMEM89
Cancer3DTMEM89(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM89
MedgenTMEM89
Genetic Testing Registry TMEM89
NextProtA2RUT3 [Medical]
TSGene440955
GENETestsTMEM89
Target ValidationTMEM89
Huge Navigator TMEM89 [HugePedia]
snp3D : Map Gene to Disease440955
BioCentury BCIQTMEM89
ClinGenTMEM89
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440955
Chemical/Pharm GKB GenePA142670742
Clinical trialTMEM89
Miscellaneous
canSAR (ICR)TMEM89 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM89
EVEXTMEM89
GoPubMedTMEM89
iHOPTMEM89
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:17 CET 2017

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