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TMEM8C (transmembrane protein 8C)

Identity

Alias_symbol (synonym)TMEM226
Other aliasMYOMAKER
HGNC (Hugo) TMEM8C
LocusID (NCBI) 389827
Atlas_Id 56400
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 133514586 and ends at 133524946 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM8C   33778
Cards
Entrez_Gene (NCBI)TMEM8C  389827  transmembrane protein 8C
AliasesMYOMAKER; TMEM226
GeneCards (Weizmann)TMEM8C
Ensembl hg19 (Hinxton)ENSG00000187616 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187616 [Gene_View]  chr9:133514586-133524946 [Contig_View]  TMEM8C [Vega]
ICGC DataPortalENSG00000187616
TCGA cBioPortalTMEM8C
AceView (NCBI)TMEM8C
Genatlas (Paris)TMEM8C
WikiGenes389827
SOURCE (Princeton)TMEM8C
Genetics Home Reference (NIH)TMEM8C
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM8C  -     chr9:133514586-133524946 -  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM8C  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM8C - 9q34.2 [CytoView hg19]  TMEM8C - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBITMEM8C [Mapview hg19]  TMEM8C [Mapview hg38]
OMIM615345   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM8C
Cluster EST : UnigeneHs.512467 [ NCBI ]
CGAP (NCI)Hs.512467
Alternative Splicing GalleryENSG00000187616
Gene ExpressionTMEM8C [ NCBI-GEO ]   TMEM8C [ EBI - ARRAY_EXPRESS ]   TMEM8C [ SEEK ]   TMEM8C [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM8C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389827
GTEX Portal (Tissue expression)TMEM8C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NI61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NI61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NI61
Splice isoforms : SwissVarA6NI61
PhosPhoSitePlusA6NI61
Domains : Interpro (EBI)DUF3522   
Domain families : Pfam (Sanger)DUF3522 (PF12036)   
Domain families : Pfam (NCBI)pfam12036   
Conserved Domain (NCBI)TMEM8C
DMDM Disease mutations389827
Blocks (Seattle)TMEM8C
SuperfamilyA6NI61
Human Protein AtlasENSG00000187616
Peptide AtlasA6NI61
IPIIPI00374559   
Protein Interaction databases
DIP (DOE-UCLA)A6NI61
IntAct (EBI)A6NI61
FunCoupENSG00000187616
BioGRIDTMEM8C
STRING (EMBL)TMEM8C
ZODIACTMEM8C
Ontologies - Pathways
QuickGOA6NI61
Ontology : AmiGOplasma membrane  plasma membrane  muscle organ development  myoblast fusion  myoblast fusion involved in skeletal muscle regeneration  integral component of membrane  plasma membrane fusion  
Ontology : EGO-EBIplasma membrane  plasma membrane  muscle organ development  myoblast fusion  myoblast fusion involved in skeletal muscle regeneration  integral component of membrane  plasma membrane fusion  
NDEx NetworkTMEM8C
Atlas of Cancer Signalling NetworkTMEM8C
Wikipedia pathwaysTMEM8C
Orthology - Evolution
OrthoDB389827
GeneTree (enSembl)ENSG00000187616
Phylogenetic Trees/Animal Genes : TreeFamTMEM8C
HOVERGENA6NI61
HOGENOMA6NI61
Homologs : HomoloGeneTMEM8C
Homology/Alignments : Family Browser (UCSC)TMEM8C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM8C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM8C
dbVarTMEM8C
ClinVarTMEM8C
1000_GenomesTMEM8C 
Exome Variant ServerTMEM8C
ExAC (Exome Aggregation Consortium)TMEM8C (select the gene name)
Genetic variants : HAPMAP389827
Genomic Variants (DGV)TMEM8C [DGVbeta]
DECIPHERTMEM8C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM8C 
Mutations
ICGC Data PortalTMEM8C 
TCGA Data PortalTMEM8C 
Broad Tumor PortalTMEM8C
OASIS PortalTMEM8C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM8C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM8C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM8C
DgiDB (Drug Gene Interaction Database)TMEM8C
DoCM (Curated mutations)TMEM8C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM8C (select a term)
intoGenTMEM8C
Cancer3DTMEM8C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615345   
Orphanet
MedgenTMEM8C
Genetic Testing Registry TMEM8C
NextProtA6NI61 [Medical]
TSGene389827
GENETestsTMEM8C
Target ValidationTMEM8C
Huge Navigator TMEM8C [HugePedia]
snp3D : Map Gene to Disease389827
BioCentury BCIQTMEM8C
ClinGenTMEM8C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389827
Chemical/Pharm GKB GenePA165586306
Clinical trialTMEM8C
Miscellaneous
canSAR (ICR)TMEM8C (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM8C
EVEXTMEM8C
GoPubMedTMEM8C
iHOPTMEM8C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:35:30 CEST 2017

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