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TMEM9 (transmembrane protein 9)

Identity

Alias_symbol (synonym)TMEM9A
Other aliasDERM4
HGNC (Hugo) TMEM9
LocusID (NCBI) 252839
Atlas_Id 74991
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201134771 and ends at 201171582 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCARB1 (12q24.31) / TMEM9 (1q32.1)TMEM9 (1q32.1) / KIAA1522 (1p35.1)TMEM9 (1q32.1) / MYO5B (18q21.1)
TMEM9 (1q32.1) / TMEM9 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM9   18823
Cards
Entrez_Gene (NCBI)TMEM9  252839  transmembrane protein 9
AliasesDERM4; TMEM9A
GeneCards (Weizmann)TMEM9
Ensembl hg19 (Hinxton)ENSG00000116857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116857 [Gene_View]  chr1:201134771-201171582 [Contig_View]  TMEM9 [Vega]
ICGC DataPortalENSG00000116857
TCGA cBioPortalTMEM9
AceView (NCBI)TMEM9
Genatlas (Paris)TMEM9
WikiGenes252839
SOURCE (Princeton)TMEM9
Genetics Home Reference (NIH)TMEM9
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM9  -     chr1:201134771-201171582 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM9  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM9 - 1q32.1 [CytoView hg19]  TMEM9 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBITMEM9 [Mapview hg19]  TMEM9 [Mapview hg38]
OMIM616877   
Gene and transcription
Genbank (Entrez)AB013909 AF151020 AI201238 AK054883 AK075335
RefSeq transcript (Entrez)NM_001288564 NM_001288565 NM_001288566 NM_001288567 NM_001288568 NM_001288569 NM_001288570 NM_001288571 NM_016456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM9
Cluster EST : UnigeneHs.181444 [ NCBI ]
CGAP (NCI)Hs.181444
Alternative Splicing GalleryENSG00000116857
Gene ExpressionTMEM9 [ NCBI-GEO ]   TMEM9 [ EBI - ARRAY_EXPRESS ]   TMEM9 [ SEEK ]   TMEM9 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)252839
GTEX Portal (Tissue expression)TMEM9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0T7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0T7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0T7
Splice isoforms : SwissVarQ9P0T7
PhosPhoSitePlusQ9P0T7
Domains : Interpro (EBI)TMEM9   
Domain families : Pfam (Sanger)Tmemb_9 (PF05434)   
Domain families : Pfam (NCBI)pfam05434   
Conserved Domain (NCBI)TMEM9
DMDM Disease mutations252839
Blocks (Seattle)TMEM9
SuperfamilyQ9P0T7
Human Protein AtlasENSG00000116857
Peptide AtlasQ9P0T7
HPRD15542
IPIIPI00009333   IPI00513833   IPI00902513   IPI00640650   IPI00978386   IPI00550346   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0T7
IntAct (EBI)Q9P0T7
FunCoupENSG00000116857
BioGRIDTMEM9
STRING (EMBL)TMEM9
ZODIACTMEM9
Ontologies - Pathways
QuickGOQ9P0T7
Ontology : AmiGOmolecular_function  lysosome  lysosomal membrane  late endosome  transport  biological_process  integral component of membrane  late endosome membrane  
Ontology : EGO-EBImolecular_function  lysosome  lysosomal membrane  late endosome  transport  biological_process  integral component of membrane  late endosome membrane  
NDEx NetworkTMEM9
Atlas of Cancer Signalling NetworkTMEM9
Wikipedia pathwaysTMEM9
Orthology - Evolution
OrthoDB252839
GeneTree (enSembl)ENSG00000116857
Phylogenetic Trees/Animal Genes : TreeFamTMEM9
HOVERGENQ9P0T7
HOGENOMQ9P0T7
Homologs : HomoloGeneTMEM9
Homology/Alignments : Family Browser (UCSC)TMEM9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM9
dbVarTMEM9
ClinVarTMEM9
1000_GenomesTMEM9 
Exome Variant ServerTMEM9
ExAC (Exome Aggregation Consortium)TMEM9 (select the gene name)
Genetic variants : HAPMAP252839
Genomic Variants (DGV)TMEM9 [DGVbeta]
DECIPHERTMEM9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM9 
Mutations
ICGC Data PortalTMEM9 
TCGA Data PortalTMEM9 
Broad Tumor PortalTMEM9
OASIS PortalTMEM9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM9
DgiDB (Drug Gene Interaction Database)TMEM9
DoCM (Curated mutations)TMEM9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM9 (select a term)
intoGenTMEM9
Cancer3DTMEM9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616877   
Orphanet
MedgenTMEM9
Genetic Testing Registry TMEM9
NextProtQ9P0T7 [Medical]
TSGene252839
GENETestsTMEM9
Target ValidationTMEM9
Huge Navigator TMEM9 [HugePedia]
snp3D : Map Gene to Disease252839
BioCentury BCIQTMEM9
ClinGenTMEM9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD252839
Chemical/Pharm GKB GenePA38696
Clinical trialTMEM9
Miscellaneous
canSAR (ICR)TMEM9 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM9
EVEXTMEM9
GoPubMedTMEM9
iHOPTMEM9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:31 CEST 2017

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