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TMEM92 (transmembrane protein 92)

Identity

Alias_symbol (synonym)FLJ33318
Other alias-
HGNC (Hugo) TMEM92
LocusID (NCBI) 162461
Atlas_Id 74993
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50271406 and ends at 50281485 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM92 (17q21.33) / TMEM92 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM92   26579
Cards
Entrez_Gene (NCBI)TMEM92  162461  transmembrane protein 92
Aliases
GeneCards (Weizmann)TMEM92
Ensembl hg19 (Hinxton)ENSG00000167105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167105 [Gene_View]  chr17:50271406-50281485 [Contig_View]  TMEM92 [Vega]
ICGC DataPortalENSG00000167105
TCGA cBioPortalTMEM92
AceView (NCBI)TMEM92
Genatlas (Paris)TMEM92
WikiGenes162461
SOURCE (Princeton)TMEM92
Genetics Home Reference (NIH)TMEM92
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM92  -     chr17:50271406-50281485 +  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM92  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblTMEM92 - 17q21.33 [CytoView hg19]  TMEM92 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBITMEM92 [Mapview hg19]  TMEM92 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090637 AW293202 AY358204 BC064507 DB072318
RefSeq transcript (Entrez)NM_001168215 NM_153229
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM92
Cluster EST : UnigeneHs.224630 [ NCBI ]
CGAP (NCI)Hs.224630
Alternative Splicing GalleryENSG00000167105
Gene ExpressionTMEM92 [ NCBI-GEO ]   TMEM92 [ EBI - ARRAY_EXPRESS ]   TMEM92 [ SEEK ]   TMEM92 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM92 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162461
GTEX Portal (Tissue expression)TMEM92
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXU6
Splice isoforms : SwissVarQ6UXU6
PhosPhoSitePlusQ6UXU6
Domains : Interpro (EBI)WBP1-like   
Domain families : Pfam (Sanger)WBP-1 (PF11669)   
Domain families : Pfam (NCBI)pfam11669   
Conserved Domain (NCBI)TMEM92
DMDM Disease mutations162461
Blocks (Seattle)TMEM92
SuperfamilyQ6UXU6
Human Protein AtlasENSG00000167105
Peptide AtlasQ6UXU6
HPRD08743
IPIIPI00168238   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXU6
IntAct (EBI)Q6UXU6
FunCoupENSG00000167105
BioGRIDTMEM92
STRING (EMBL)TMEM92
ZODIACTMEM92
Ontologies - Pathways
QuickGOQ6UXU6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM92
Atlas of Cancer Signalling NetworkTMEM92
Wikipedia pathwaysTMEM92
Orthology - Evolution
OrthoDB162461
GeneTree (enSembl)ENSG00000167105
Phylogenetic Trees/Animal Genes : TreeFamTMEM92
HOVERGENQ6UXU6
HOGENOMQ6UXU6
Homologs : HomoloGeneTMEM92
Homology/Alignments : Family Browser (UCSC)TMEM92
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM92 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM92
dbVarTMEM92
ClinVarTMEM92
1000_GenomesTMEM92 
Exome Variant ServerTMEM92
ExAC (Exome Aggregation Consortium)TMEM92 (select the gene name)
Genetic variants : HAPMAP162461
Genomic Variants (DGV)TMEM92 [DGVbeta]
DECIPHERTMEM92 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM92 
Mutations
ICGC Data PortalTMEM92 
TCGA Data PortalTMEM92 
Broad Tumor PortalTMEM92
OASIS PortalTMEM92 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM92  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM92
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM92
DgiDB (Drug Gene Interaction Database)TMEM92
DoCM (Curated mutations)TMEM92 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM92 (select a term)
intoGenTMEM92
Cancer3DTMEM92(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM92
Genetic Testing Registry TMEM92
NextProtQ6UXU6 [Medical]
TSGene162461
GENETestsTMEM92
Target ValidationTMEM92
Huge Navigator TMEM92 [HugePedia]
snp3D : Map Gene to Disease162461
BioCentury BCIQTMEM92
ClinGenTMEM92
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162461
Chemical/Pharm GKB GenePA142670744
Clinical trialTMEM92
Miscellaneous
canSAR (ICR)TMEM92 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM92
EVEXTMEM92
GoPubMedTMEM92
iHOPTMEM92
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:32 CEST 2017

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