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TMEM98 (transmembrane protein 98)

Identity

Alias (NCBI)TADA1
HGNC (Hugo) TMEM98
HGNC Alias symbDKFZP564K1964
LocusID (NCBI) 26022
Atlas_Id 40319
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 32928153 and ends at 32944315 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM98 (17q11.2) / GPATCH8 (17q21.31)TMEM98 17q11.2 / GPATCH8 17q21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM98   24529
Cards
Entrez_Gene (NCBI)TMEM98    transmembrane protein 98
AliasesTADA1
GeneCards (Weizmann)TMEM98
Ensembl hg19 (Hinxton)ENSG00000006042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006042 [Gene_View]  ENSG00000006042 [Sequence]  chr17:32928153-32944315 [Contig_View]  TMEM98 [Vega]
ICGC DataPortalENSG00000006042
TCGA cBioPortalTMEM98
AceView (NCBI)TMEM98
Genatlas (Paris)TMEM98
SOURCE (Princeton)TMEM98
Genetics Home Reference (NIH)TMEM98
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM98  -     chr17:32928153-32944315 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM98  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathTMEM98 - 17q11.2 [CytoView hg19]  TMEM98 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000006042
Genome Data Viewer NCBITMEM98 [Mapview hg19]  
OMIM615949   615972   
Gene and transcription
Genbank (Entrez)AF132000 AK313569 AL117619 AY358573 BC000526
RefSeq transcript (Entrez)NM_001033504 NM_001301746 NM_015544
Consensus coding sequences : CCDS (NCBI)TMEM98
Gene ExpressionTMEM98 [ NCBI-GEO ]   TMEM98 [ EBI - ARRAY_EXPRESS ]   TMEM98 [ SEEK ]   TMEM98 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM98 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM98 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26022
GTEX Portal (Tissue expression)TMEM98
Human Protein AtlasENSG00000006042-TMEM98 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2Y6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2Y6
PhosPhoSitePlusQ9Y2Y6
Domains : Interpro (EBI)TMEM98   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM98
SuperfamilyQ9Y2Y6
AlphaFold pdb e-kbQ9Y2Y6   
Human Protein Atlas [tissue]ENSG00000006042-TMEM98 [tissue]
HPRD13171
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y6
IntAct (EBI)Q9Y2Y6
BioGRIDTMEM98
STRING (EMBL)TMEM98
ZODIACTMEM98
Ontologies - Pathways
QuickGOQ9Y2Y6
Ontology : AmiGOprotein binding  extracellular space  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  negative regulation of protein processing  integral component of membrane  negative regulation of myelination  T-helper 1 cell differentiation  negative regulation of oligodendrocyte differentiation  extracellular exosome  negative regulation of protein localization to nucleus  
Ontology : EGO-EBIprotein binding  extracellular space  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  negative regulation of protein processing  integral component of membrane  negative regulation of myelination  T-helper 1 cell differentiation  negative regulation of oligodendrocyte differentiation  extracellular exosome  negative regulation of protein localization to nucleus  
NDEx NetworkTMEM98
Atlas of Cancer Signalling NetworkTMEM98
Wikipedia pathwaysTMEM98
Orthology - Evolution
OrthoDB26022
GeneTree (enSembl)ENSG00000006042
Phylogenetic Trees/Animal Genes : TreeFamTMEM98
Homologs : HomoloGeneTMEM98
Homology/Alignments : Family Browser (UCSC)TMEM98
Gene fusions - Rearrangements
Fusion : MitelmanTMEM98/GPATCH8 [17q11.2/17q21.31]  
Fusion : QuiverTMEM98
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM98 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM98
dbVarTMEM98
ClinVarTMEM98
MonarchTMEM98
1000_GenomesTMEM98 
Exome Variant ServerTMEM98
GNOMAD BrowserENSG00000006042
Varsome BrowserTMEM98
ACMGTMEM98 variants
VarityQ9Y2Y6
Genomic Variants (DGV)TMEM98 [DGVbeta]
DECIPHERTMEM98 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM98 
Mutations
ICGC Data PortalTMEM98 
TCGA Data PortalTMEM98 
Broad Tumor PortalTMEM98
OASIS PortalTMEM98 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM98  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM98
Mutations and Diseases : HGMDTMEM98
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM98
DgiDB (Drug Gene Interaction Database)TMEM98
DoCM (Curated mutations)TMEM98
CIViC (Clinical Interpretations of Variants in Cancer)TMEM98
Cancer3DTMEM98
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615949    615972   
Orphanet10378   
DisGeNETTMEM98
MedgenTMEM98
Genetic Testing Registry TMEM98
NextProtQ9Y2Y6 [Medical]
GENETestsTMEM98
Target ValidationTMEM98
Huge Navigator TMEM98 [HugePedia]
ClinGenTMEM98
Clinical trials, drugs, therapy
MyCancerGenomeTMEM98
Protein Interactions : CTDTMEM98
Pharm GKB GenePA142670747
PharosQ9Y2Y6
Clinical trialTMEM98
Miscellaneous
canSAR (ICR)TMEM98
HarmonizomeTMEM98
DataMed IndexTMEM98
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM98
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:34 CEST 2021

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