Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM98 (transmembrane protein 98)

Identity

Alias_symbol (synonym)DKFZP564K1964
Other aliasTADA1
HGNC (Hugo) TMEM98
LocusID (NCBI) 26022
Atlas_Id 40319
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 32927910 and ends at 32941649 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM98 (17q11.2) / GPATCH8 (17q21.31)TMEM98 17q11.2 / GPATCH8 17q21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t1717q11q21ID102459


External links

Nomenclature
HGNC (Hugo)TMEM98   24529
Cards
Entrez_Gene (NCBI)TMEM98  26022  transmembrane protein 98
AliasesTADA1
GeneCards (Weizmann)TMEM98
Ensembl hg19 (Hinxton)ENSG00000006042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006042 [Gene_View]  ENSG00000006042 [Sequence]  chr17:32927910-32941649 [Contig_View]  TMEM98 [Vega]
ICGC DataPortalENSG00000006042
TCGA cBioPortalTMEM98
AceView (NCBI)TMEM98
Genatlas (Paris)TMEM98
WikiGenes26022
SOURCE (Princeton)TMEM98
Genetics Home Reference (NIH)TMEM98
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM98  -     chr17:32927910-32941649 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM98  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathTMEM98 - 17q11.2 [CytoView hg19]  TMEM98 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000006042
Mapping of homologs : NCBITMEM98 [Mapview hg19]  TMEM98 [Mapview hg38]
OMIM615949   615972   
Gene and transcription
Genbank (Entrez)AF132000 AK313569 AL117619 AY358573 BC000526
RefSeq transcript (Entrez)NM_001033504 NM_001301746 NM_015544
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM98
Alternative Splicing GalleryENSG00000006042
Gene ExpressionTMEM98 [ NCBI-GEO ]   TMEM98 [ EBI - ARRAY_EXPRESS ]   TMEM98 [ SEEK ]   TMEM98 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM98 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26022
GTEX Portal (Tissue expression)TMEM98
Human Protein AtlasENSG00000006042-TMEM98 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM98
DMDM Disease mutations26022
Blocks (Seattle)TMEM98
Human Protein Atlas [tissue]ENSG00000006042-TMEM98 [tissue]
HPRD13171
IPIIPI00023540   IPI00791648   IPI00791365   
Protein Interaction databases
FunCoupENSG00000006042
BioGRIDTMEM98
STRING (EMBL)TMEM98
ZODIACTMEM98
Ontologies - Pathways
Huge Navigator TMEM98 [HugePedia]
snp3D : Map Gene to Disease26022
BioCentury BCIQTMEM98
ClinGenTMEM98
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26022
Chemical/Pharm GKB GenePA142670747
Clinical trialTMEM98
Miscellaneous
canSAR (ICR)TMEM98 (select the gene name)
DataMed IndexTMEM98
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM98
EVEXTMEM98
GoPubMedTMEM98
iHOPTMEM98
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:13:28 CET 2020

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