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TMEM98 (transmembrane protein 98)

Identity

Alias_symbol (synonym)DKFZP564K1964
Other aliasTADA1
HGNC (Hugo) TMEM98
LocusID (NCBI) 26022
Atlas_Id 40319
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 31254928 and ends at 31268667 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM98 (17q11.2) / GPATCH8 (17q21.31)TMEM98 17q11.2 / GPATCH8 17q21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM98   24529
Cards
Entrez_Gene (NCBI)TMEM98  26022  transmembrane protein 98
AliasesTADA1
GeneCards (Weizmann)TMEM98
Ensembl hg19 (Hinxton)ENSG00000006042 [Gene_View]  chr17:31254928-31268667 [Contig_View]  TMEM98 [Vega]
Ensembl hg38 (Hinxton)ENSG00000006042 [Gene_View]  chr17:31254928-31268667 [Contig_View]  TMEM98 [Vega]
ICGC DataPortalENSG00000006042
TCGA cBioPortalTMEM98
AceView (NCBI)TMEM98
Genatlas (Paris)TMEM98
WikiGenes26022
SOURCE (Princeton)TMEM98
Genetics Home Reference (NIH)TMEM98
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM98  -     chr17:31254928-31268667 +  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM98  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblTMEM98 - 17q11.2 [CytoView hg19]  TMEM98 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM98 [Mapview hg19]  TMEM98 [Mapview hg38]
OMIM615949   615972   
Gene and transcription
Genbank (Entrez)AF132000 AK313569 AL117619 AM392645 AY358573
RefSeq transcript (Entrez)NM_001033504 NM_001301746 NM_015544
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_034264 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)TMEM98
Cluster EST : UnigeneHs.3447 [ NCBI ]
CGAP (NCI)Hs.3447
Alternative Splicing GalleryENSG00000006042
Gene ExpressionTMEM98 [ NCBI-GEO ]   TMEM98 [ EBI - ARRAY_EXPRESS ]   TMEM98 [ SEEK ]   TMEM98 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM98 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26022
GTEX Portal (Tissue expression)TMEM98
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2Y6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2Y6
Splice isoforms : SwissVarQ9Y2Y6
PhosPhoSitePlusQ9Y2Y6
Domains : Interpro (EBI)TMEM98   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM98
DMDM Disease mutations26022
Blocks (Seattle)TMEM98
SuperfamilyQ9Y2Y6
Human Protein AtlasENSG00000006042
Peptide AtlasQ9Y2Y6
HPRD13171
IPIIPI00023540   IPI00791648   IPI00791365   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y6
IntAct (EBI)Q9Y2Y6
FunCoupENSG00000006042
BioGRIDTMEM98
STRING (EMBL)TMEM98
ZODIACTMEM98
Ontologies - Pathways
QuickGOQ9Y2Y6
Ontology : AmiGOendoplasmic reticulum  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum  integral component of membrane  
NDEx NetworkTMEM98
Atlas of Cancer Signalling NetworkTMEM98
Wikipedia pathwaysTMEM98
Orthology - Evolution
OrthoDB26022
GeneTree (enSembl)ENSG00000006042
Phylogenetic Trees/Animal Genes : TreeFamTMEM98
HOVERGENQ9Y2Y6
HOGENOMQ9Y2Y6
Homologs : HomoloGeneTMEM98
Homology/Alignments : Family Browser (UCSC)TMEM98
Gene fusions - Rearrangements
Fusion : MitelmanTMEM98/GPATCH8 [17q11.2/17q21.31]  
Fusion: TCGATMEM98 17q11.2 GPATCH8 17q21.31 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM98 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM98
dbVarTMEM98
ClinVarTMEM98
1000_GenomesTMEM98 
Exome Variant ServerTMEM98
ExAC (Exome Aggregation Consortium)TMEM98 (select the gene name)
Genetic variants : HAPMAP26022
Genomic Variants (DGV)TMEM98 [DGVbeta]
DECIPHER (Syndromes)17:31254928-31268667  ENSG00000006042
CONAN: Copy Number AnalysisTMEM98 
Mutations
ICGC Data PortalTMEM98 
TCGA Data PortalTMEM98 
Broad Tumor PortalTMEM98
OASIS PortalTMEM98 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM98  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM98
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM98
DgiDB (Drug Gene Interaction Database)TMEM98
DoCM (Curated mutations)TMEM98 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM98 (select a term)
intoGenTMEM98
Cancer3DTMEM98(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615949    615972   
Orphanet10378   
MedgenTMEM98
Genetic Testing Registry TMEM98
NextProtQ9Y2Y6 [Medical]
TSGene26022
GENETestsTMEM98
Huge Navigator TMEM98 [HugePedia]
snp3D : Map Gene to Disease26022
BioCentury BCIQTMEM98
ClinGenTMEM98
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26022
Chemical/Pharm GKB GenePA142670747
Clinical trialTMEM98
Miscellaneous
canSAR (ICR)TMEM98 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM98
EVEXTMEM98
GoPubMedTMEM98
iHOPTMEM98
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:32 CET 2017

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