Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM99 (transmembrane protein 99)

Identity

Alias_symbol (synonym)MGC21518
Other alias-
HGNC (Hugo) TMEM99
LocusID (NCBI) 147184
Atlas_Id 74996
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40819185 and ends at 40836274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIP4K2B (17q12) / TMEM99 (17q21.2)SBF2 (11p15.4) / TMEM99 (17q21.2)SBF2 TMEM99
PIP4K2B TMEM99

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM99   28305
Cards
Entrez_Gene (NCBI)TMEM99  147184  transmembrane protein 99
Aliases
GeneCards (Weizmann)TMEM99
Ensembl hg19 (Hinxton)ENSG00000167920 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167920 [Gene_View]  chr17:40819185-40836274 [Contig_View]  TMEM99 [Vega]
ICGC DataPortalENSG00000167920
TCGA cBioPortalTMEM99
AceView (NCBI)TMEM99
Genatlas (Paris)TMEM99
WikiGenes147184
SOURCE (Princeton)TMEM99
Genetics Home Reference (NIH)TMEM99
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM99  -     chr17:40819185-40836274 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM99  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM99 - 17q21.2 [CytoView hg19]  TMEM99 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBITMEM99 [Mapview hg19]  TMEM99 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI301318 AK097454 AK298616 AV649893 AW151726
RefSeq transcript (Entrez)NM_001195386 NM_001195387 NM_145274
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM99
Cluster EST : UnigeneHs.744059 [ NCBI ]
CGAP (NCI)Hs.744059
Alternative Splicing GalleryENSG00000167920
Gene ExpressionTMEM99 [ NCBI-GEO ]   TMEM99 [ EBI - ARRAY_EXPRESS ]   TMEM99 [ SEEK ]   TMEM99 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM99 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147184
GTEX Portal (Tissue expression)TMEM99
Human Protein AtlasENSG00000167920-TMEM99 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N816   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N816  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N816
Splice isoforms : SwissVarQ8N816
PhosPhoSitePlusQ8N816
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM99
DMDM Disease mutations147184
Blocks (Seattle)TMEM99
SuperfamilyQ8N816
Human Protein Atlas [tissue]ENSG00000167920-TMEM99 [tissue]
Peptide AtlasQ8N816
HPRD14478
IPIIPI00792977   IPI00096201   
Protein Interaction databases
DIP (DOE-UCLA)Q8N816
IntAct (EBI)Q8N816
FunCoupENSG00000167920
BioGRIDTMEM99
STRING (EMBL)TMEM99
ZODIACTMEM99
Ontologies - Pathways
QuickGOQ8N816
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM99
Atlas of Cancer Signalling NetworkTMEM99
Wikipedia pathwaysTMEM99
Orthology - Evolution
OrthoDB147184
GeneTree (enSembl)ENSG00000167920
Phylogenetic Trees/Animal Genes : TreeFamTMEM99
HOVERGENQ8N816
HOGENOMQ8N816
Homologs : HomoloGeneTMEM99
Homology/Alignments : Family Browser (UCSC)TMEM99
Gene fusions - Rearrangements
Fusion: TCGASBF2 TMEM99
Fusion: TCGAPIP4K2B TMEM99
Fusion: Tumor Portal TMEM99
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM99
dbVarTMEM99
ClinVarTMEM99
1000_GenomesTMEM99 
Exome Variant ServerTMEM99
ExAC (Exome Aggregation Consortium)ENSG00000167920
GNOMAD BrowserENSG00000167920
Genetic variants : HAPMAP147184
Genomic Variants (DGV)TMEM99 [DGVbeta]
DECIPHERTMEM99 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM99 
Mutations
ICGC Data PortalTMEM99 
TCGA Data PortalTMEM99 
Broad Tumor PortalTMEM99
OASIS PortalTMEM99 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM99  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM99
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM99
DgiDB (Drug Gene Interaction Database)TMEM99
DoCM (Curated mutations)TMEM99 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM99 (select a term)
intoGenTMEM99
Cancer3DTMEM99(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM99
Genetic Testing Registry TMEM99
NextProtQ8N816 [Medical]
TSGene147184
GENETestsTMEM99
Target ValidationTMEM99
Huge Navigator TMEM99 [HugePedia]
snp3D : Map Gene to Disease147184
BioCentury BCIQTMEM99
ClinGenTMEM99
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147184
Chemical/Pharm GKB GenePA142670748
Clinical trialTMEM99
Miscellaneous
canSAR (ICR)TMEM99 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM99
EVEXTMEM99
GoPubMedTMEM99
iHOPTMEM99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:33:23 CET 2017

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