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TMEM9B (TMEM9 domain family member B)

Identity

Alias (NCBI)C11orf15
HGNC (Hugo) TMEM9B
HGNC Previous nameC11orf15
HGNC Previous namechromosome 11 open reading frame 15
 TMEM9 domain family, member B
LocusID (NCBI) 56674
Atlas_Id 74997
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 8947201 and ends at 8964773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NPIPB7 (16q23.1) / TMEM9B (11p15.4)PAX5 (9p13.2) / TMEM9B (11p15.4)TMEM9B (11p15.4) / NPIPB7 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(9;11)(p13;p15) PAX5/TMEM9B


External links

Nomenclature
HGNC (Hugo)TMEM9B   1168
Cards
Entrez_Gene (NCBI)TMEM9B    TMEM9 domain family member B
AliasesC11orf15
GeneCards (Weizmann)TMEM9B
Ensembl hg19 (Hinxton)ENSG00000175348 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175348 [Gene_View]  ENSG00000175348 [Sequence]  chr11:8947201-8964773 [Contig_View]  TMEM9B [Vega]
ICGC DataPortalENSG00000175348
TCGA cBioPortalTMEM9B
AceView (NCBI)TMEM9B
Genatlas (Paris)TMEM9B
SOURCE (Princeton)TMEM9B
Genetics Home Reference (NIH)TMEM9B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM9B  -     chr11:8947201-8964773 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM9B  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathTMEM9B - 11p15.4 [CytoView hg19]  TMEM9B - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000175348
genome Data Viewer NCBITMEM9B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA433929 AB097017 AI346520 AK074677 AK300712
RefSeq transcript (Entrez)NM_001286094 NM_001286095 NM_020644
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM9B
Alternative Splicing GalleryENSG00000175348
Gene ExpressionTMEM9B [ NCBI-GEO ]   TMEM9B [ EBI - ARRAY_EXPRESS ]   TMEM9B [ SEEK ]   TMEM9B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM9B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM9B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56674
GTEX Portal (Tissue expression)TMEM9B
Human Protein AtlasENSG00000175348-TMEM9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ34
Splice isoforms : SwissVarQ9NQ34
PhosPhoSitePlusQ9NQ34
Domains : Interpro (EBI)TMEM9   
Domain families : Pfam (Sanger)Tmemb_9 (PF05434)   
Domain families : Pfam (NCBI)pfam05434   
Conserved Domain (NCBI)TMEM9B
Blocks (Seattle)TMEM9B
SuperfamilyQ9NQ34
Human Protein Atlas [tissue]ENSG00000175348-TMEM9B [tissue]
Peptide AtlasQ9NQ34
HPRD12603
IPIIPI00009880   IPI00984675   IPI00975756   IPI00978859   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ34
IntAct (EBI)Q9NQ34
BioGRIDTMEM9B
STRING (EMBL)TMEM9B
ZODIACTMEM9B
Ontologies - Pathways
QuickGOQ9NQ34
Ontology : AmiGOlysosomal membrane  integral component of membrane  early endosome membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  
Ontology : EGO-EBIlysosomal membrane  integral component of membrane  early endosome membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  
NDEx NetworkTMEM9B
Atlas of Cancer Signalling NetworkTMEM9B
Wikipedia pathwaysTMEM9B
Orthology - Evolution
OrthoDB56674
GeneTree (enSembl)ENSG00000175348
Phylogenetic Trees/Animal Genes : TreeFamTMEM9B
HOGENOMQ9NQ34
Homologs : HomoloGeneTMEM9B
Homology/Alignments : Family Browser (UCSC)TMEM9B
Gene fusions - Rearrangements
Fusion : QuiverTMEM9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM9B [hg38]
dbVarTMEM9B
ClinVarTMEM9B
MonarchTMEM9B
1000_GenomesTMEM9B 
Exome Variant ServerTMEM9B
GNOMAD BrowserENSG00000175348
Varsome BrowserTMEM9B
Genomic Variants (DGV)TMEM9B [DGVbeta]
DECIPHERTMEM9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM9B 
Mutations
ICGC Data PortalTMEM9B 
TCGA Data PortalTMEM9B 
Broad Tumor PortalTMEM9B
OASIS PortalTMEM9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM9B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM9B
Mutations and Diseases : HGMDTMEM9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM9B
DgiDB (Drug Gene Interaction Database)TMEM9B
DoCM (Curated mutations)TMEM9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM9B (select a term)
intoGenTMEM9B
Cancer3DTMEM9B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM9B
MedgenTMEM9B
Genetic Testing Registry TMEM9B
NextProtQ9NQ34 [Medical]
GENETestsTMEM9B
Target ValidationTMEM9B
Huge Navigator TMEM9B [HugePedia]
ClinGenTMEM9B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM9B
Protein Interactions : CTD
Pharm GKB GenePA25482
Clinical trialTMEM9B
Miscellaneous
canSAR (ICR)TMEM9B (select the gene name)
HarmonizomeTMEM9B
DataMed IndexTMEM9B
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM9B
EVEXTMEM9B
GoPubMedTMEM9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 17:32:37 CET 2020

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