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TMEM9B (TMEM9 domain family member B)

Identity

Alias_namesC11orf15
chromosome 11 open reading frame 15
TMEM9 domain family, member B
Other alias
HGNC (Hugo) TMEM9B
LocusID (NCBI) 56674
Atlas_Id 74997
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 8947201 and ends at 8964773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NPIPB7 (16q23.1) / TMEM9B (11p15.4)PAX5 (9p13.2) / TMEM9B (11p15.4)TMEM9B (11p15.4) / NPIPB7 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM9B   1168
Cards
Entrez_Gene (NCBI)TMEM9B  56674  TMEM9 domain family member B
AliasesC11orf15
GeneCards (Weizmann)TMEM9B
Ensembl hg19 (Hinxton)ENSG00000175348 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175348 [Gene_View]  chr11:8947201-8964773 [Contig_View]  TMEM9B [Vega]
ICGC DataPortalENSG00000175348
TCGA cBioPortalTMEM9B
AceView (NCBI)TMEM9B
Genatlas (Paris)TMEM9B
WikiGenes56674
SOURCE (Princeton)TMEM9B
Genetics Home Reference (NIH)TMEM9B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM9B  -     chr11:8947201-8964773 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM9B  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTMEM9B - 11p15.4 [CytoView hg19]  TMEM9B - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITMEM9B [Mapview hg19]  TMEM9B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA433929 AB097017 AI346520 AK074677 AK300712
RefSeq transcript (Entrez)NM_001286094 NM_001286095 NM_020644
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM9B
Cluster EST : UnigeneHs.501853 [ NCBI ]
CGAP (NCI)Hs.501853
Alternative Splicing GalleryENSG00000175348
Gene ExpressionTMEM9B [ NCBI-GEO ]   TMEM9B [ EBI - ARRAY_EXPRESS ]   TMEM9B [ SEEK ]   TMEM9B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56674
GTEX Portal (Tissue expression)TMEM9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ34
Splice isoforms : SwissVarQ9NQ34
PhosPhoSitePlusQ9NQ34
Domains : Interpro (EBI)TMEM9   
Domain families : Pfam (Sanger)Tmemb_9 (PF05434)   
Domain families : Pfam (NCBI)pfam05434   
Conserved Domain (NCBI)TMEM9B
DMDM Disease mutations56674
Blocks (Seattle)TMEM9B
SuperfamilyQ9NQ34
Human Protein AtlasENSG00000175348
Peptide AtlasQ9NQ34
HPRD12603
IPIIPI00009880   IPI00984675   IPI00975756   IPI00978859   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ34
IntAct (EBI)Q9NQ34
FunCoupENSG00000175348
BioGRIDTMEM9B
STRING (EMBL)TMEM9B
ZODIACTMEM9B
Ontologies - Pathways
QuickGOQ9NQ34
Ontology : AmiGOsignal transducer activity  lysosome  lysosomal membrane  signal transduction  integral component of membrane  early endosome membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  
Ontology : EGO-EBIsignal transducer activity  lysosome  lysosomal membrane  signal transduction  integral component of membrane  early endosome membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  
NDEx NetworkTMEM9B
Atlas of Cancer Signalling NetworkTMEM9B
Wikipedia pathwaysTMEM9B
Orthology - Evolution
OrthoDB56674
GeneTree (enSembl)ENSG00000175348
Phylogenetic Trees/Animal Genes : TreeFamTMEM9B
HOVERGENQ9NQ34
HOGENOMQ9NQ34
Homologs : HomoloGeneTMEM9B
Homology/Alignments : Family Browser (UCSC)TMEM9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM9B
dbVarTMEM9B
ClinVarTMEM9B
1000_GenomesTMEM9B 
Exome Variant ServerTMEM9B
ExAC (Exome Aggregation Consortium)TMEM9B (select the gene name)
Genetic variants : HAPMAP56674
Genomic Variants (DGV)TMEM9B [DGVbeta]
DECIPHERTMEM9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM9B 
Mutations
ICGC Data PortalTMEM9B 
TCGA Data PortalTMEM9B 
Broad Tumor PortalTMEM9B
OASIS PortalTMEM9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM9B
DgiDB (Drug Gene Interaction Database)TMEM9B
DoCM (Curated mutations)TMEM9B (select the gene name)
CIViC (Clinical Interpretations od Varhafts in Cancer)TMEM9B (select a term)
intoGenTMEM9B
Cancer3DTMEM9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM9B
Genetic Testing Registry TMEM9B
NextProtQ9NQ34 [Medical]
TSGene56674
GENETestsTMEM9B
Target ValidationTMEM9B
Huge Navigator TMEM9B [HugePedia]
snp3D : Map Gene to Disease56674
BioCentury BCIQTMEM9B
ClinGenTMEM9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56674
Chemical/Pharm GKB GenePA25482
Clinical trialTMEM9B
Miscellaneous
canSAR (ICR)TMEM9B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM9B
EVEXTMEM9B
GoPubMedTMEM9B
iHOPTMEM9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:08 CEST 2017

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