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TMIE (transmembrane inner ear)

Identity

Alias (NCBI)DFNB6
HGNC (Hugo) TMIE
HGNC Previous nameDFNB6
HGNC Previous namedeafness, autosomal recessive 6
LocusID (NCBI) 259236
Atlas_Id 74999
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 46701392 and ends at 46710886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMIE   30800
Cards
Entrez_Gene (NCBI)TMIE    transmembrane inner ear
AliasesDFNB6
GeneCards (Weizmann)TMIE
Ensembl hg19 (Hinxton)ENSG00000181585 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181585 [Gene_View]  ENSG00000181585 [Sequence]  chr3:46701392-46710886 [Contig_View]  TMIE [Vega]
ICGC DataPortalENSG00000181585
TCGA cBioPortalTMIE
AceView (NCBI)TMIE
Genatlas (Paris)TMIE
SOURCE (Princeton)TMIE
Genetics Home Reference (NIH)TMIE
Genomic and cartography
GoldenPath hg38 (UCSC)TMIE  -     chr3:46701392-46710886 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMIE  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathTMIE - 3p21.31 [CytoView hg19]  TMIE - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000181585
Genome Data Viewer NCBITMIE [Mapview hg19]  
OMIM600971   607237   
Gene and transcription
Genbank (Entrez)AY081842 BC126258 BC126260 BM696323 F22661
RefSeq transcript (Entrez)NM_001370524 NM_001370525 NM_147196
Consensus coding sequences : CCDS (NCBI)TMIE
Gene ExpressionTMIE [ NCBI-GEO ]   TMIE [ EBI - ARRAY_EXPRESS ]   TMIE [ SEEK ]   TMIE [ MEM ]
Gene Expression Viewer (FireBrowse)TMIE [ Firebrowse - Broad ]
GenevisibleExpression of TMIE in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259236
GTEX Portal (Tissue expression)TMIE
Human Protein AtlasENSG00000181585-TMIE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEW7
PhosPhoSitePlusQ8NEW7
Domains : Interpro (EBI)TMIE   
Domain families : Pfam (Sanger)TMIE (PF16038)   
Domain families : Pfam (NCBI)pfam16038   
Conserved Domain (NCBI)TMIE
SuperfamilyQ8NEW7
AlphaFold pdb e-kbQ8NEW7   
Human Protein Atlas [tissue]ENSG00000181585-TMIE [tissue]
HPRD06252
Protein Interaction databases
DIP (DOE-UCLA)Q8NEW7
IntAct (EBI)Q8NEW7
BioGRIDTMIE
STRING (EMBL)TMIE
ZODIACTMIE
Ontologies - Pathways
QuickGOQ8NEW7
Ontology : AmiGOsensory perception of sound  integral component of membrane  inner ear morphogenesis  
Ontology : EGO-EBIsensory perception of sound  integral component of membrane  inner ear morphogenesis  
NDEx NetworkTMIE
Atlas of Cancer Signalling NetworkTMIE
Wikipedia pathwaysTMIE
Orthology - Evolution
OrthoDB259236
GeneTree (enSembl)ENSG00000181585
Phylogenetic Trees/Animal Genes : TreeFamTMIE
Homologs : HomoloGeneTMIE
Homology/Alignments : Family Browser (UCSC)TMIE
Gene fusions - Rearrangements
Fusion : QuiverTMIE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMIE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMIE
dbVarTMIE
ClinVarTMIE
MonarchTMIE
1000_GenomesTMIE 
Exome Variant ServerTMIE
GNOMAD BrowserENSG00000181585
Varsome BrowserTMIE
ACMGTMIE variants
VarityQ8NEW7
Genomic Variants (DGV)TMIE [DGVbeta]
DECIPHERTMIE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMIE 
Mutations
ICGC Data PortalTMIE 
TCGA Data PortalTMIE 
Broad Tumor PortalTMIE
OASIS PortalTMIE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMIE  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMIE
Mutations and Diseases : HGMDTMIE
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMIE
DgiDB (Drug Gene Interaction Database)TMIE
DoCM (Curated mutations)TMIE
CIViC (Clinical Interpretations of Variants in Cancer)TMIE
Cancer3DTMIE
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600971    607237   
Orphanet12047   
DisGeNETTMIE
MedgenTMIE
Genetic Testing Registry TMIE
NextProtQ8NEW7 [Medical]
GENETestsTMIE
Target ValidationTMIE
Huge Navigator TMIE [HugePedia]
ClinGenTMIE
Clinical trials, drugs, therapy
MyCancerGenomeTMIE
Protein Interactions : CTDTMIE
Pharm GKB GenePA134972473
PharosQ8NEW7
Clinical trialTMIE
Miscellaneous
canSAR (ICR)TMIE
HarmonizomeTMIE
DataMed IndexTMIE
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMIE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:24 CEST 2021

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