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TMIGD1 (transmembrane and immunoglobulin domain containing 1)

Identity

Alias (NCBI)TMIGD
UNQ9372
HGNC (Hugo) TMIGD1
HGNC Alias symbUNQ9372
HGNC Previous nameTMIGD
LocusID (NCBI) 388364
Atlas_Id 57203
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 30316341 and ends at 30334057 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDX52 (17q12) / TMIGD1 (17q11.2)MYO1D (17q11.2) / TMIGD1 (17q11.2)TMIGD1 (17q11.2) / ASIC2 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMIGD1   32431
Cards
Entrez_Gene (NCBI)TMIGD1    transmembrane and immunoglobulin domain containing 1
AliasesTMIGD; UNQ9372
GeneCards (Weizmann)TMIGD1
Ensembl hg19 (Hinxton)ENSG00000182271 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182271 [Gene_View]  ENSG00000182271 [Sequence]  chr17:30316341-30334057 [Contig_View]  TMIGD1 [Vega]
ICGC DataPortalENSG00000182271
TCGA cBioPortalTMIGD1
AceView (NCBI)TMIGD1
Genatlas (Paris)TMIGD1
SOURCE (Princeton)TMIGD1
Genetics Home Reference (NIH)TMIGD1
Genomic and cartography
GoldenPath hg38 (UCSC)TMIGD1  -     chr17:30316341-30334057 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMIGD1  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathTMIGD1 - 17q11.2 [CytoView hg19]  TMIGD1 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000182271
Genome Data Viewer NCBITMIGD1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK172838 AK290266 AY358153 BC137201 BC137202
RefSeq transcript (Entrez)NM_001319942 NM_206832
Consensus coding sequences : CCDS (NCBI)TMIGD1
Gene ExpressionTMIGD1 [ NCBI-GEO ]   TMIGD1 [ EBI - ARRAY_EXPRESS ]   TMIGD1 [ SEEK ]   TMIGD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMIGD1 [ Firebrowse - Broad ]
GenevisibleExpression of TMIGD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388364
GTEX Portal (Tissue expression)TMIGD1
Human Protein AtlasENSG00000182271-TMIGD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXZ0
PhosPhoSitePlusQ6UXZ0
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)TMIGD1
SuperfamilyQ6UXZ0
AlphaFold pdb e-kbQ6UXZ0   
Human Protein Atlas [tissue]ENSG00000182271-TMIGD1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6UXZ0
IntAct (EBI)Q6UXZ0
BioGRIDTMIGD1
STRING (EMBL)TMIGD1
ZODIACTMIGD1
Ontologies - Pathways
QuickGOQ6UXZ0
Ontology : AmiGOcytoplasm  plasma membrane  integral component of membrane  regulation of cell migration  regulation of cell population proliferation  neuron projection  negative regulation of apoptotic process  regulation of membrane permeability  
Ontology : EGO-EBIcytoplasm  plasma membrane  integral component of membrane  regulation of cell migration  regulation of cell population proliferation  neuron projection  negative regulation of apoptotic process  regulation of membrane permeability  
NDEx NetworkTMIGD1
Atlas of Cancer Signalling NetworkTMIGD1
Wikipedia pathwaysTMIGD1
Orthology - Evolution
OrthoDB388364
GeneTree (enSembl)ENSG00000182271
Phylogenetic Trees/Animal Genes : TreeFamTMIGD1
Homologs : HomoloGeneTMIGD1
Homology/Alignments : Family Browser (UCSC)TMIGD1
Gene fusions - Rearrangements
Fusion : QuiverTMIGD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMIGD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMIGD1
dbVarTMIGD1
ClinVarTMIGD1
MonarchTMIGD1
1000_GenomesTMIGD1 
Exome Variant ServerTMIGD1
GNOMAD BrowserENSG00000182271
Varsome BrowserTMIGD1
ACMGTMIGD1 variants
VarityQ6UXZ0
Genomic Variants (DGV)TMIGD1 [DGVbeta]
DECIPHERTMIGD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMIGD1 
Mutations
ICGC Data PortalTMIGD1 
TCGA Data PortalTMIGD1 
Broad Tumor PortalTMIGD1
OASIS PortalTMIGD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMIGD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMIGD1
Mutations and Diseases : HGMDTMIGD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMIGD1
DgiDB (Drug Gene Interaction Database)TMIGD1
DoCM (Curated mutations)TMIGD1
CIViC (Clinical Interpretations of Variants in Cancer)TMIGD1
Cancer3DTMIGD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMIGD1
MedgenTMIGD1
Genetic Testing Registry TMIGD1
NextProtQ6UXZ0 [Medical]
GENETestsTMIGD1
Target ValidationTMIGD1
Huge Navigator TMIGD1 [HugePedia]
ClinGenTMIGD1
Clinical trials, drugs, therapy
MyCancerGenomeTMIGD1
Protein Interactions : CTDTMIGD1
Pharm GKB GenePA142670725
PharosQ6UXZ0
Clinical trialTMIGD1
Miscellaneous
canSAR (ICR)TMIGD1
HarmonizomeTMIGD1
DataMed IndexTMIGD1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMIGD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:35 CEST 2021

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