Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMIGD1 (transmembrane and immunoglobulin domain containing 1)

Identity

Alias_namesTMIGD
Alias_symbol (synonym)UNQ9372
Other alias
HGNC (Hugo) TMIGD1
LocusID (NCBI) 388364
Atlas_Id 75000
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 30316348 and ends at 30334059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX52 (17q12) / TMIGD1 (17q11.2)MYO1D (17q11.2) / TMIGD1 (17q11.2)TMIGD1 (17q11.2) / ASIC2 (17q11.2)
MYO1D TMIGD1DDX52 TMIGD1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMIGD1   32431
Cards
Entrez_Gene (NCBI)TMIGD1  388364  transmembrane and immunoglobulin domain containing 1
AliasesTMIGD; UNQ9372
GeneCards (Weizmann)TMIGD1
Ensembl hg19 (Hinxton)ENSG00000182271 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182271 [Gene_View]  chr17:30316348-30334059 [Contig_View]  TMIGD1 [Vega]
ICGC DataPortalENSG00000182271
TCGA cBioPortalTMIGD1
AceView (NCBI)TMIGD1
Genatlas (Paris)TMIGD1
WikiGenes388364
SOURCE (Princeton)TMIGD1
Genetics Home Reference (NIH)TMIGD1
Genomic and cartography
GoldenPath hg38 (UCSC)TMIGD1  -     chr17:30316348-30334059 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMIGD1  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblTMIGD1 - 17q11.2 [CytoView hg19]  TMIGD1 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBITMIGD1 [Mapview hg19]  TMIGD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK172838 AK290266 AY358153 BC137201 BC137202
RefSeq transcript (Entrez)NM_001319942 NM_206832
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMIGD1
Cluster EST : UnigeneHs.371005 [ NCBI ]
CGAP (NCI)Hs.371005
Alternative Splicing GalleryENSG00000182271
Gene ExpressionTMIGD1 [ NCBI-GEO ]   TMIGD1 [ EBI - ARRAY_EXPRESS ]   TMIGD1 [ SEEK ]   TMIGD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMIGD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388364
GTEX Portal (Tissue expression)TMIGD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXZ0
Splice isoforms : SwissVarQ6UXZ0
PhosPhoSitePlusQ6UXZ0
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)TMIGD1
DMDM Disease mutations388364
Blocks (Seattle)TMIGD1
SuperfamilyQ6UXZ0
Human Protein AtlasENSG00000182271
Peptide AtlasQ6UXZ0
HPRD18274
IPIIPI00397622   IPI00719274   IPI01018748   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXZ0
IntAct (EBI)Q6UXZ0
FunCoupENSG00000182271
BioGRIDTMIGD1
STRING (EMBL)TMIGD1
ZODIACTMIGD1
Ontologies - Pathways
QuickGOQ6UXZ0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMIGD1
Atlas of Cancer Signalling NetworkTMIGD1
Wikipedia pathwaysTMIGD1
Orthology - Evolution
OrthoDB388364
GeneTree (enSembl)ENSG00000182271
Phylogenetic Trees/Animal Genes : TreeFamTMIGD1
HOVERGENQ6UXZ0
HOGENOMQ6UXZ0
Homologs : HomoloGeneTMIGD1
Homology/Alignments : Family Browser (UCSC)TMIGD1
Gene fusions - Rearrangements
Fusion: TCGAMYO1D TMIGD1
Fusion: TCGADDX52 TMIGD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMIGD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMIGD1
dbVarTMIGD1
ClinVarTMIGD1
1000_GenomesTMIGD1 
Exome Variant ServerTMIGD1
ExAC (Exome Aggregation Consortium)TMIGD1 (select the gene name)
Genetic variants : HAPMAP388364
Genomic Variants (DGV)TMIGD1 [DGVbeta]
DECIPHERTMIGD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMIGD1 
Mutations
ICGC Data PortalTMIGD1 
TCGA Data PortalTMIGD1 
Broad Tumor PortalTMIGD1
OASIS PortalTMIGD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMIGD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMIGD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMIGD1
DgiDB (Drug Gene Interaction Database)TMIGD1
DoCM (Curated mutations)TMIGD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMIGD1 (select a term)
intoGenTMIGD1
Cancer3DTMIGD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMIGD1
Genetic Testing Registry TMIGD1
NextProtQ6UXZ0 [Medical]
TSGene388364
GENETestsTMIGD1
Target ValidationTMIGD1
Huge Navigator TMIGD1 [HugePedia]
snp3D : Map Gene to Disease388364
BioCentury BCIQTMIGD1
ClinGenTMIGD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388364
Chemical/Pharm GKB GenePA142670725
Clinical trialTMIGD1
Miscellaneous
canSAR (ICR)TMIGD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMIGD1
EVEXTMIGD1
GoPubMedTMIGD1
iHOPTMIGD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:46:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.