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TMIGD2 (transmembrane and immunoglobulin domain containing 2)

Identity

Alias_symbol (synonym)MGC23244
CD28H
IGPR-1
Other aliasIGPR1
HGNC (Hugo) TMIGD2
LocusID (NCBI) 126259
Atlas_Id 56115
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4292225 and ends at 4302428 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMIGD2   28324
Cards
Entrez_Gene (NCBI)TMIGD2  126259  transmembrane and immunoglobulin domain containing 2
AliasesCD28H; IGPR-1; IGPR1
GeneCards (Weizmann)TMIGD2
Ensembl hg19 (Hinxton)ENSG00000167664 [Gene_View]  chr19:4292225-4302428 [Contig_View]  TMIGD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167664 [Gene_View]  chr19:4292225-4302428 [Contig_View]  TMIGD2 [Vega]
ICGC DataPortalENSG00000167664
TCGA cBioPortalTMIGD2
AceView (NCBI)TMIGD2
Genatlas (Paris)TMIGD2
WikiGenes126259
SOURCE (Princeton)TMIGD2
Genetics Home Reference (NIH)TMIGD2
Genomic and cartography
GoldenPath hg19 (UCSC)TMIGD2  -     chr19:4292225-4302428 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMIGD2  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblTMIGD2 - 19p13.3 [CytoView hg19]  TMIGD2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBITMIGD2 [Mapview hg19]  TMIGD2 [Mapview hg38]
OMIM614715   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001169126 NM_001308232 NM_144615
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMIGD2
Cluster EST : UnigeneHs.263928 [ NCBI ]
CGAP (NCI)Hs.263928
Alternative Splicing GalleryENSG00000167664
Gene ExpressionTMIGD2 [ NCBI-GEO ]   TMIGD2 [ EBI - ARRAY_EXPRESS ]   TMIGD2 [ SEEK ]   TMIGD2 [ MEM ]
Gene Expression Viewer (FireBrowse)TMIGD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126259
GTEX Portal (Tissue expression)TMIGD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BF3
Splice isoforms : SwissVarQ96BF3
PhosPhoSitePlusQ96BF3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)TMIGD2
DMDM Disease mutations126259
Blocks (Seattle)TMIGD2
SuperfamilyQ96BF3
Human Protein AtlasENSG00000167664
Peptide AtlasQ96BF3
HPRD14487
IPIIPI00059928   IPI00827868   
Protein Interaction databases
DIP (DOE-UCLA)Q96BF3
IntAct (EBI)Q96BF3
FunCoupENSG00000167664
BioGRIDTMIGD2
STRING (EMBL)TMIGD2
ZODIACTMIGD2
Ontologies - Pathways
QuickGOQ96BF3
Ontology : AmiGOpositive regulation of cytokine production  immunoglobulin production  protein binding  extracellular space  plasma membrane  immune response  signal transduction  coreceptor activity  integral component of membrane  T cell costimulation  positive regulation of activated T cell proliferation  positive regulation of angiogenesis  
Ontology : EGO-EBIpositive regulation of cytokine production  immunoglobulin production  protein binding  extracellular space  plasma membrane  immune response  signal transduction  coreceptor activity  integral component of membrane  T cell costimulation  positive regulation of activated T cell proliferation  positive regulation of angiogenesis  
NDEx NetworkTMIGD2
Atlas of Cancer Signalling NetworkTMIGD2
Wikipedia pathwaysTMIGD2
Orthology - Evolution
OrthoDB126259
GeneTree (enSembl)ENSG00000167664
Phylogenetic Trees/Animal Genes : TreeFamTMIGD2
HOVERGENQ96BF3
HOGENOMQ96BF3
Homologs : HomoloGeneTMIGD2
Homology/Alignments : Family Browser (UCSC)TMIGD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMIGD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMIGD2
dbVarTMIGD2
ClinVarTMIGD2
1000_GenomesTMIGD2 
Exome Variant ServerTMIGD2
ExAC (Exome Aggregation Consortium)TMIGD2 (select the gene name)
Genetic variants : HAPMAP126259
Genomic Variants (DGV)TMIGD2 [DGVbeta]
DECIPHER (Syndromes)19:4292225-4302428  ENSG00000167664
CONAN: Copy Number AnalysisTMIGD2 
Mutations
ICGC Data PortalTMIGD2 
TCGA Data PortalTMIGD2 
Broad Tumor PortalTMIGD2
OASIS PortalTMIGD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMIGD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMIGD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMIGD2
DgiDB (Drug Gene Interaction Database)TMIGD2
DoCM (Curated mutations)TMIGD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMIGD2 (select a term)
intoGenTMIGD2
Cancer3DTMIGD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614715   
Orphanet
MedgenTMIGD2
Genetic Testing Registry TMIGD2
NextProtQ96BF3 [Medical]
TSGene126259
GENETestsTMIGD2
Huge Navigator TMIGD2 [HugePedia]
snp3D : Map Gene to Disease126259
BioCentury BCIQTMIGD2
ClinGenTMIGD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126259
Chemical/Pharm GKB GenePA145148047
Clinical trialTMIGD2
Miscellaneous
canSAR (ICR)TMIGD2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMIGD2
EVEXTMIGD2
GoPubMedTMIGD2
iHOPTMIGD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:33 CET 2017

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