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TMIGD3 (transmembrane and immunoglobulin domain containing 3)

Identity

Other aliasAD026
HGNC (Hugo) TMIGD3
LocusID (NCBI) 57413
Atlas_Id 57071
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 111483348 and ends at 111503488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMIGD3   51375
Cards
Entrez_Gene (NCBI)TMIGD3  57413  transmembrane and immunoglobulin domain containing 3
AliasesAD026
GeneCards (Weizmann)TMIGD3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:111483348-111503488 [Contig_View]  TMIGD3 [Vega]
TCGA cBioPortalTMIGD3
AceView (NCBI)TMIGD3
Genatlas (Paris)TMIGD3
WikiGenes57413
SOURCE (Princeton)TMIGD3
Genetics Home Reference (NIH)TMIGD3
Genomic and cartography
GoldenPath hg38 (UCSC)TMIGD3  -     chr1:111483348-111503488 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMIGD3  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblTMIGD3 - 1p13.2 [CytoView hg19]  TMIGD3 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBITMIGD3 [Mapview hg19]  TMIGD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358644 BC041707 BC064411 BI828255 HY011888
RefSeq transcript (Entrez)NM_001081976 NM_001302680 NM_020683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMIGD3
Cluster EST : UnigeneHs.281342 [ NCBI ]
CGAP (NCI)Hs.281342
Gene ExpressionTMIGD3 [ NCBI-GEO ]   TMIGD3 [ EBI - ARRAY_EXPRESS ]   TMIGD3 [ SEEK ]   TMIGD3 [ MEM ]
Gene Expression Viewer (FireBrowse)TMIGD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57413
GTEX Portal (Tissue expression)TMIGD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMS9
Splice isoforms : SwissVarP0DMS9
PhosPhoSitePlusP0DMS9
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMIGD3
DMDM Disease mutations57413
Blocks (Seattle)TMIGD3
SuperfamilyP0DMS9
Peptide AtlasP0DMS9
Protein Interaction databases
DIP (DOE-UCLA)P0DMS9
IntAct (EBI)P0DMS9
BioGRIDTMIGD3
STRING (EMBL)TMIGD3
ZODIACTMIGD3
Ontologies - Pathways
QuickGOP0DMS9
Ontology : AmiGOintegral component of plasma membrane  inflammatory response  signal transduction  activation of adenylate cyclase activity  regulation of heart contraction  negative regulation of cell proliferation  response to wounding  membrane  negative regulation of cell migration  negative regulation of NF-kappaB transcription factor activity  
Ontology : EGO-EBIintegral component of plasma membrane  inflammatory response  signal transduction  activation of adenylate cyclase activity  regulation of heart contraction  negative regulation of cell proliferation  response to wounding  membrane  negative regulation of cell migration  negative regulation of NF-kappaB transcription factor activity  
NDEx NetworkTMIGD3
Atlas of Cancer Signalling NetworkTMIGD3
Wikipedia pathwaysTMIGD3
Orthology - Evolution
OrthoDB57413
Phylogenetic Trees/Animal Genes : TreeFamTMIGD3
HOVERGENP0DMS9
HOGENOMP0DMS9
Homologs : HomoloGeneTMIGD3
Homology/Alignments : Family Browser (UCSC)TMIGD3
Gene fusions - Rearrangements
Tumor Fusion PortalTMIGD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMIGD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMIGD3
dbVarTMIGD3
ClinVarTMIGD3
1000_GenomesTMIGD3 
Exome Variant ServerTMIGD3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP57413
Genomic Variants (DGV)TMIGD3 [DGVbeta]
DECIPHERTMIGD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMIGD3 
Mutations
ICGC Data PortalTMIGD3 
TCGA Data PortalTMIGD3 
Broad Tumor PortalTMIGD3
OASIS PortalTMIGD3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMIGD3
BioMutasearch TMIGD3
DgiDB (Drug Gene Interaction Database)TMIGD3
DoCM (Curated mutations)TMIGD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMIGD3 (select a term)
intoGenTMIGD3
Cancer3DTMIGD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMIGD3
MedgenTMIGD3
Genetic Testing Registry TMIGD3
NextProtP0DMS9 [Medical]
TSGene57413
GENETestsTMIGD3
Target ValidationTMIGD3
Huge Navigator TMIGD3 [HugePedia]
snp3D : Map Gene to Disease57413
BioCentury BCIQTMIGD3
ClinGenTMIGD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57413
Chemical/Pharm GKB GenePA166123749
Clinical trialTMIGD3
Miscellaneous
canSAR (ICR)TMIGD3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMIGD3
EVEXTMIGD3
GoPubMedTMIGD3
iHOPTMIGD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 21:03:19 CET 2017

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