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TMOD1 (tropomodulin 1)

Identity

Alias_namesD9S57E
TMOD
Alias_symbol (synonym)ETMOD
Other alias
HGNC (Hugo) TMOD1
LocusID (NCBI) 7111
Atlas_Id 43775
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 97501180 and ends at 97601743 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDK5RAP2 (9q33.2) / TMOD1 (9q22.33)DSCAM (21q22.2) / TMOD1 (9q22.33)TMOD1 (9q22.33) / AGPAT3 (21q22.3)
TMOD1 (9q22.33) / DAPK2 (15q22.31)TRIO (5p15.2) / TMOD1 (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMOD1   11871
Cards
Entrez_Gene (NCBI)TMOD1  7111  tropomodulin 1
AliasesD9S57E; ETMOD; TMOD
GeneCards (Weizmann)TMOD1
Ensembl hg19 (Hinxton)ENSG00000136842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136842 [Gene_View]  chr9:97501180-97601743 [Contig_View]  TMOD1 [Vega]
ICGC DataPortalENSG00000136842
TCGA cBioPortalTMOD1
AceView (NCBI)TMOD1
Genatlas (Paris)TMOD1
WikiGenes7111
SOURCE (Princeton)TMOD1
Genetics Home Reference (NIH)TMOD1
Genomic and cartography
GoldenPath hg38 (UCSC)TMOD1  -     chr9:97501180-97601743 +  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMOD1  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblTMOD1 - 9q22.33 [CytoView hg19]  TMOD1 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBITMOD1 [Mapview hg19]  TMOD1 [Mapview hg38]
OMIM190930   
Gene and transcription
Genbank (Entrez)AF131836 AK095748 AK096156 AK314533 BC002660
RefSeq transcript (Entrez)NM_001166116 NM_003275
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMOD1
Cluster EST : UnigeneHs.723236 [ NCBI ]
CGAP (NCI)Hs.723236
Alternative Splicing GalleryENSG00000136842
Gene ExpressionTMOD1 [ NCBI-GEO ]   TMOD1 [ EBI - ARRAY_EXPRESS ]   TMOD1 [ SEEK ]   TMOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7111
GTEX Portal (Tissue expression)TMOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP28289   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP28289  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP28289
Splice isoforms : SwissVarP28289
PhosPhoSitePlusP28289
Domains : Interpro (EBI)L_dom-like    TMOD    TMOD1   
Domain families : Pfam (Sanger)Tropomodulin (PF03250)   
Domain families : Pfam (NCBI)pfam03250   
Conserved Domain (NCBI)TMOD1
DMDM Disease mutations7111
Blocks (Seattle)TMOD1
PDB (SRS)4PKG    4PKH    4PKI    4Z8G    4Z94   
PDB (PDBSum)4PKG    4PKH    4PKI    4Z8G    4Z94   
PDB (IMB)4PKG    4PKH    4PKI    4Z8G    4Z94   
PDB (RSDB)4PKG    4PKH    4PKI    4Z8G    4Z94   
Structural Biology KnowledgeBase4PKG    4PKH    4PKI    4Z8G    4Z94   
SCOP (Structural Classification of Proteins)4PKG    4PKH    4PKI    4Z8G    4Z94   
CATH (Classification of proteins structures)4PKG    4PKH    4PKI    4Z8G    4Z94   
SuperfamilyP28289
Human Protein AtlasENSG00000136842
Peptide AtlasP28289
HPRD01838
IPIIPI00002375   IPI00645850   
Protein Interaction databases
DIP (DOE-UCLA)P28289
IntAct (EBI)P28289
FunCoupENSG00000136842
BioGRIDTMOD1
STRING (EMBL)TMOD1
ZODIACTMOD1
Ontologies - Pathways
QuickGOP28289
Ontology : AmiGOactin binding  tropomyosin binding  cytosol  actin filament  COP9 signalosome  adult locomotory behavior  membrane  myofibril  sarcomere  muscle filament sliding  myofibril assembly  cortical cytoskeleton  actin filament binding  pointed-end actin filament capping  lens fiber cell development  
Ontology : EGO-EBIactin binding  tropomyosin binding  cytosol  actin filament  COP9 signalosome  adult locomotory behavior  membrane  myofibril  sarcomere  muscle filament sliding  myofibril assembly  cortical cytoskeleton  actin filament binding  pointed-end actin filament capping  lens fiber cell development  
NDEx NetworkTMOD1
Atlas of Cancer Signalling NetworkTMOD1
Wikipedia pathwaysTMOD1
Orthology - Evolution
OrthoDB7111
GeneTree (enSembl)ENSG00000136842
Phylogenetic Trees/Animal Genes : TreeFamTMOD1
HOVERGENP28289
HOGENOMP28289
Homologs : HomoloGeneTMOD1
Homology/Alignments : Family Browser (UCSC)TMOD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMOD1
dbVarTMOD1
ClinVarTMOD1
1000_GenomesTMOD1 
Exome Variant ServerTMOD1
ExAC (Exome Aggregation Consortium)TMOD1 (select the gene name)
Genetic variants : HAPMAP7111
Genomic Variants (DGV)TMOD1 [DGVbeta]
DECIPHERTMOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMOD1 
Mutations
ICGC Data PortalTMOD1 
TCGA Data PortalTMOD1 
Broad Tumor PortalTMOD1
OASIS PortalTMOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMOD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMOD1
DgiDB (Drug Gene Interaction Database)TMOD1
DoCM (Curated mutations)TMOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMOD1 (select a term)
intoGenTMOD1
Cancer3DTMOD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM190930   
Orphanet
MedgenTMOD1
Genetic Testing Registry TMOD1
NextProtP28289 [Medical]
TSGene7111
GENETestsTMOD1
Target ValidationTMOD1
Huge Navigator TMOD1 [HugePedia]
snp3D : Map Gene to Disease7111
BioCentury BCIQTMOD1
ClinGenTMOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7111
Chemical/Pharm GKB GenePA36572
Clinical trialTMOD1
Miscellaneous
canSAR (ICR)TMOD1 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMOD1
EVEXTMOD1
GoPubMedTMOD1
iHOPTMOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:17:12 CEST 2017

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