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TMOD2 (tropomodulin 2)

Identity

Alias_symbol (synonym)NTMOD
Other aliasN-TMOD
HGNC (Hugo) TMOD2
LocusID (NCBI) 29767
Atlas_Id 43601
Location 15q21.2  [Link to chromosome band 15q21]
Location_base_pair Starts at 51751561 and ends at 51816361 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NPIPB7 (16q23.1) / TMOD2 (15q21.2)UNC5D (8p12) / TMOD2 (15q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMOD2   11872
Cards
Entrez_Gene (NCBI)TMOD2  29767  tropomodulin 2
AliasesN-TMOD; NTMOD
GeneCards (Weizmann)TMOD2
Ensembl hg19 (Hinxton)ENSG00000128872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128872 [Gene_View]  chr15:51751561-51816361 [Contig_View]  TMOD2 [Vega]
ICGC DataPortalENSG00000128872
TCGA cBioPortalTMOD2
AceView (NCBI)TMOD2
Genatlas (Paris)TMOD2
WikiGenes29767
SOURCE (Princeton)TMOD2
Genetics Home Reference (NIH)TMOD2
Genomic and cartography
GoldenPath hg38 (UCSC)TMOD2  -     chr15:51751561-51816361 +  15q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMOD2  -     15q21.2   [Description]    (hg19-Feb_2009)
EnsemblTMOD2 - 15q21.2 [CytoView hg19]  TMOD2 - 15q21.2 [CytoView hg38]
Mapping of homologs : NCBITMOD2 [Mapview hg19]  TMOD2 [Mapview hg38]
OMIM602928   
Gene and transcription
Genbank (Entrez)AB073658 AF177169 AK021496 AK025346 AK124907
RefSeq transcript (Entrez)NM_001142885 NM_014548
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMOD2
Cluster EST : UnigeneHs.513734 [ NCBI ]
CGAP (NCI)Hs.513734
Alternative Splicing GalleryENSG00000128872
Gene ExpressionTMOD2 [ NCBI-GEO ]   TMOD2 [ EBI - ARRAY_EXPRESS ]   TMOD2 [ SEEK ]   TMOD2 [ MEM ]
Gene Expression Viewer (FireBrowse)TMOD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29767
GTEX Portal (Tissue expression)TMOD2
Human Protein AtlasENSG00000128872-TMOD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZR1
Splice isoforms : SwissVarQ9NZR1
PhosPhoSitePlusQ9NZR1
Domains : Interpro (EBI)L_dom-like    TMOD    TMOD2   
Domain families : Pfam (Sanger)Tropomodulin (PF03250)   
Domain families : Pfam (NCBI)pfam03250   
Conserved Domain (NCBI)TMOD2
DMDM Disease mutations29767
Blocks (Seattle)TMOD2
SuperfamilyQ9NZR1
Human Protein Atlas [tissue]ENSG00000128872-TMOD2 [tissue]
Peptide AtlasQ9NZR1
HPRD04237
IPIIPI00005089   IPI00908786   IPI00794581   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZR1
IntAct (EBI)Q9NZR1
FunCoupENSG00000128872
BioGRIDTMOD2
STRING (EMBL)TMOD2
ZODIACTMOD2
Ontologies - Pathways
QuickGOQ9NZR1
Ontology : AmiGOactin binding  tropomyosin binding  cytoplasm  cytoskeleton  neuron-neuron synaptic transmission  nervous system development  learning or memory  growth cone  positive regulation of G-protein coupled receptor protein signaling pathway  pointed-end actin filament capping  
Ontology : EGO-EBIactin binding  tropomyosin binding  cytoplasm  cytoskeleton  neuron-neuron synaptic transmission  nervous system development  learning or memory  growth cone  positive regulation of G-protein coupled receptor protein signaling pathway  pointed-end actin filament capping  
NDEx NetworkTMOD2
Atlas of Cancer Signalling NetworkTMOD2
Wikipedia pathwaysTMOD2
Orthology - Evolution
OrthoDB29767
GeneTree (enSembl)ENSG00000128872
Phylogenetic Trees/Animal Genes : TreeFamTMOD2
HOVERGENQ9NZR1
HOGENOMQ9NZR1
Homologs : HomoloGeneTMOD2
Homology/Alignments : Family Browser (UCSC)TMOD2
Gene fusions - Rearrangements
Fusion: Tumor Portal TMOD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMOD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMOD2
dbVarTMOD2
ClinVarTMOD2
1000_GenomesTMOD2 
Exome Variant ServerTMOD2
ExAC (Exome Aggregation Consortium)ENSG00000128872
GNOMAD BrowserENSG00000128872
Genetic variants : HAPMAP29767
Genomic Variants (DGV)TMOD2 [DGVbeta]
DECIPHERTMOD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMOD2 
Mutations
ICGC Data PortalTMOD2 
TCGA Data PortalTMOD2 
Broad Tumor PortalTMOD2
OASIS PortalTMOD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMOD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMOD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMOD2
DgiDB (Drug Gene Interaction Database)TMOD2
DoCM (Curated mutations)TMOD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMOD2 (select a term)
intoGenTMOD2
Cancer3DTMOD2(select the gene name)
Impact of mutations[PolyPhen2] _SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602928   
Orphanet
MedgenTMOD2
Genetic Testing Registry TMOD2
NextProtQ9NZR1 [Medical]
TSGene29767
GENETestsTMOD2
Target ValidationTMOD2
Huge Navigator TMOD2 [HugePedia]
snp3D : Map Gene to Disease29767
BioCentury BCIQTMOD2
ClinGenTMOD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29767
Chemical/Pharm GKB GenePA36573
Clinical trialTMOD2
Miscellaneous
canSAR (ICR)TMOD2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMOD2
EVEXTMOD2
GoPubMedTMOD2
iHOPTMOD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:14:58 CET 2017

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