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TMOD4 (tropomodulin 4)

Identity

Alias_namestropomodulin 4 (muscle)
Alias_symbol (synonym)Sk-Tmod
Other aliasSK-TMOD
HGNC (Hugo) TMOD4
LocusID (NCBI) 29765
Atlas_Id 75004
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151169987 and ends at 151176071 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VPS72 (1q21.3) / TMOD4 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMOD4   11874
Cards
Entrez_Gene (NCBI)TMOD4  29765  tropomodulin 4
AliasesSK-TMOD
GeneCards (Weizmann)TMOD4
Ensembl hg19 (Hinxton)ENSG00000163157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163157 [Gene_View]  chr1:151169987-151176071 [Contig_View]  TMOD4 [Vega]
ICGC DataPortalENSG00000163157
TCGA cBioPortalTMOD4
AceView (NCBI)TMOD4
Genatlas (Paris)TMOD4
WikiGenes29765
SOURCE (Princeton)TMOD4
Genetics Home Reference (NIH)TMOD4
Genomic and cartography
GoldenPath hg38 (UCSC)TMOD4  -     chr1:151169987-151176071 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMOD4  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblTMOD4 - 1q21.3 [CytoView hg19]  TMOD4 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBITMOD4 [Mapview hg19]  TMOD4 [Mapview hg38]
OMIM605834   
Gene and transcription
Genbank (Entrez)AF165217 AF177173 AK092700 AK300675 AK313280
RefSeq transcript (Entrez)NM_013353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMOD4
Cluster EST : UnigeneHs.709681 [ NCBI ]
CGAP (NCI)Hs.709681
Alternative Splicing GalleryENSG00000163157
Gene ExpressionTMOD4 [ NCBI-GEO ]   TMOD4 [ EBI - ARRAY_EXPRESS ]   TMOD4 [ SEEK ]   TMOD4 [ MEM ]
Gene Expression Viewer (FireBrowse)TMOD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29765
GTEX Portal (Tissue expression)TMOD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZQ9
Splice isoforms : SwissVarQ9NZQ9
PhosPhoSitePlusQ9NZQ9
Domains : Interpro (EBI)L_dom-like    TMOD    TMOD4   
Domain families : Pfam (Sanger)Tropomodulin (PF03250)   
Domain families : Pfam (NCBI)pfam03250   
Conserved Domain (NCBI)TMOD4
DMDM Disease mutations29765
Blocks (Seattle)TMOD4
SuperfamilyQ9NZQ9
Human Protein AtlasENSG00000163157
Peptide AtlasQ9NZQ9
HPRD16164
IPIIPI00303200   IPI00922546   IPI00384520   IPI00646436   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZQ9
IntAct (EBI)Q9NZQ9
FunCoupENSG00000163157
BioGRIDTMOD4
STRING (EMBL)TMOD4
ZODIACTMOD4
Ontologies - Pathways
QuickGOQ9NZQ9
Ontology : AmiGOtropomyosin binding  striated muscle thin filament  muscle contraction  actin filament binding  pointed-end actin filament capping  
Ontology : EGO-EBItropomyosin binding  striated muscle thin filament  muscle contraction  actin filament binding  pointed-end actin filament capping  
NDEx NetworkTMOD4
Atlas of Cancer Signalling NetworkTMOD4
Wikipedia pathwaysTMOD4
Orthology - Evolution
OrthoDB29765
GeneTree (enSembl)ENSG00000163157
Phylogenetic Trees/Animal Genes : TreeFamTMOD4
HOVERGENQ9NZQ9
HOGENOMQ9NZQ9
Homologs : HomoloGeneTMOD4
Homology/Alignments : Family Browser (UCSC)TMOD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMOD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMOD4
dbVarTMOD4
ClinVarTMOD4
1000_GenomesTMOD4 
Exome Variant ServerTMOD4
ExAC (Exome Aggregation Consortium)TMOD4 (select the gene name)
Genetic variants : HAPMAP29765
Genomic Variants (DGV)TMOD4 [DGVbeta]
DECIPHERTMOD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMOD4 
Mutations
ICGC Data PortalTMOD4 
TCGA Data PortalTMOD4 
Broad Tumor PortalTMOD4
OASIS PortalTMOD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMOD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMOD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMOD4
DgiDB (Drug Gene Interaction Database)TMOD4
DoCM (Curated mutations)TMOD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMOD4 (select a term)
intoGenTMOD4
Cancer3DTMOD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605834   
Orphanet
MedgenTMOD4
Genetic Testing Registry TMOD4
NextProtQ9NZQ9 [Medical]
TSGene29765
GENETestsTMOD4
Target ValidationTMOD4
Huge Navigator TMOD4 [HugePedia]
snp3D : Map Gene to Disease29765
BioCentury BCIQTMOD4
ClinGenTMOD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29765
Chemical/Pharm GKB GenePA36575
Clinical trialTMOD4
Miscellaneous
canSAR (ICR)TMOD4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMOD4
EVEXTMOD4
GoPubMedTMOD4
iHOPTMOD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:34 CEST 2017

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