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TMOD4 (tropomodulin 4)

Identity

Alias (NCBI)SK-TMOD
HGNC (Hugo) TMOD4
HGNC Alias symbSk-Tmod
HGNC Alias nameactin-capping protein
 skeletal tropomodulin
HGNC Previous nametropomodulin 4 (muscle)
LocusID (NCBI) 29765
Atlas_Id 75004
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151169987 and ends at 151175981 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
VPS72 (1q21.3) / TMOD4 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMOD4   11874
Cards
Entrez_Gene (NCBI)TMOD4    tropomodulin 4
AliasesSK-TMOD
GeneCards (Weizmann)TMOD4
Ensembl hg19 (Hinxton)ENSG00000163157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163157 [Gene_View]  ENSG00000163157 [Sequence]  chr1:151169987-151175981 [Contig_View]  TMOD4 [Vega]
ICGC DataPortalENSG00000163157
TCGA cBioPortalTMOD4
AceView (NCBI)TMOD4
Genatlas (Paris)TMOD4
SOURCE (Princeton)TMOD4
Genetics Home Reference (NIH)TMOD4
Genomic and cartography
GoldenPath hg38 (UCSC)TMOD4  -     chr1:151169987-151175981 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMOD4  -     1q21.3   [Description]    (hg19-Feb_2009)
GoldenPathTMOD4 - 1q21.3 [CytoView hg19]  TMOD4 - 1q21.3 [CytoView hg38]
ImmunoBaseENSG00000163157
Genome Data Viewer NCBITMOD4 [Mapview hg19]  
OMIM605834   
Gene and transcription
Genbank (Entrez)AF165217 AF177173 AK092700 AK300675 AK313280
RefSeq transcript (Entrez)NM_013353
Consensus coding sequences : CCDS (NCBI)TMOD4
Gene ExpressionTMOD4 [ NCBI-GEO ]   TMOD4 [ EBI - ARRAY_EXPRESS ]   TMOD4 [ SEEK ]   TMOD4 [ MEM ]
Gene Expression Viewer (FireBrowse)TMOD4 [ Firebrowse - Broad ]
GenevisibleExpression of TMOD4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29765
GTEX Portal (Tissue expression)TMOD4
Human Protein AtlasENSG00000163157-TMOD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZQ9
PhosPhoSitePlusQ9NZQ9
Domains : Interpro (EBI)LRR_dom_sf    TMOD    TMOD4   
Domain families : Pfam (Sanger)Tropomodulin (PF03250)   
Domain families : Pfam (NCBI)pfam03250   
Conserved Domain (NCBI)TMOD4
SuperfamilyQ9NZQ9
AlphaFold pdb e-kbQ9NZQ9   
Human Protein Atlas [tissue]ENSG00000163157-TMOD4 [tissue]
HPRD16164
Protein Interaction databases
DIP (DOE-UCLA)Q9NZQ9
IntAct (EBI)Q9NZQ9
BioGRIDTMOD4
STRING (EMBL)TMOD4
ZODIACTMOD4
Ontologies - Pathways
QuickGOQ9NZQ9
Ontology : AmiGOprotein binding  tropomyosin binding  cytoskeleton  striated muscle thin filament  striated muscle thin filament  muscle contraction  actin filament organization  myofibril  myofibril assembly  actin filament binding  pointed-end actin filament capping  
Ontology : EGO-EBIprotein binding  tropomyosin binding  cytoskeleton  striated muscle thin filament  striated muscle thin filament  muscle contraction  actin filament organization  myofibril  myofibril assembly  actin filament binding  pointed-end actin filament capping  
NDEx NetworkTMOD4
Atlas of Cancer Signalling NetworkTMOD4
Wikipedia pathwaysTMOD4
Orthology - Evolution
OrthoDB29765
GeneTree (enSembl)ENSG00000163157
Phylogenetic Trees/Animal Genes : TreeFamTMOD4
Homologs : HomoloGeneTMOD4
Homology/Alignments : Family Browser (UCSC)TMOD4
Gene fusions - Rearrangements
Fusion : QuiverTMOD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMOD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMOD4
dbVarTMOD4
ClinVarTMOD4
MonarchTMOD4
1000_GenomesTMOD4 
Exome Variant ServerTMOD4
GNOMAD BrowserENSG00000163157
Varsome BrowserTMOD4
ACMGTMOD4 variants
VarityQ9NZQ9
Genomic Variants (DGV)TMOD4 [DGVbeta]
DECIPHERTMOD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMOD4 
Mutations
ICGC Data PortalTMOD4 
TCGA Data PortalTMOD4 
Broad Tumor PortalTMOD4
OASIS PortalTMOD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMOD4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMOD4
Mutations and Diseases : HGMDTMOD4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMOD4
DgiDB (Drug Gene Interaction Database)TMOD4
DoCM (Curated mutations)TMOD4
CIViC (Clinical Interpretations of Variants in Cancer)TMOD4
Cancer3DTMOD4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605834   
Orphanet
DisGeNETTMOD4
MedgenTMOD4
Genetic Testing Registry TMOD4
NextProtQ9NZQ9 [Medical]
GENETestsTMOD4
Target ValidationTMOD4
Huge Navigator TMOD4 [HugePedia]
ClinGenTMOD4
Clinical trials, drugs, therapy
MyCancerGenomeTMOD4
Protein Interactions : CTDTMOD4
Pharm GKB GenePA36575
PharosQ9NZQ9
Clinical trialTMOD4
Miscellaneous
canSAR (ICR)TMOD4
HarmonizomeTMOD4
DataMed IndexTMOD4
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMOD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:24 CEST 2021

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