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TMPO (thymopoietin)

Identity

Alias (NCBI)CMD1T
LAP2
LEMD4
PRO0868
TP
HGNC (Hugo) TMPO
HGNC Alias symbTP
LAP2
LEMD4
HGNC Alias nameLEM domain containing 4
LocusID (NCBI) 7112
Atlas_Id 45593
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 98515573 and ends at 98535634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KRT1 (12q13.13) / TMPO (12q23.1)TMPO (12q23.1) / ARPC1A (7q22.1)TMPO (12q23.1) / TMPO (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMPO   11875
LRG (Locus Reference Genomic)LRG_443
Cards
Entrez_Gene (NCBI)TMPO    thymopoietin
AliasesCMD1T; LAP2; LEMD4; PRO0868; 
TP
GeneCards (Weizmann)TMPO
Ensembl hg19 (Hinxton)ENSG00000120802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120802 [Gene_View]  ENSG00000120802 [Sequence]  chr12:98515573-98535634 [Contig_View]  TMPO [Vega]
ICGC DataPortalENSG00000120802
TCGA cBioPortalTMPO
AceView (NCBI)TMPO
Genatlas (Paris)TMPO
SOURCE (Princeton)TMPO
Genetics Home Reference (NIH)TMPO
Genomic and cartography
GoldenPath hg38 (UCSC)TMPO  -     chr12:98515573-98535634 +  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMPO  -     12q23.1   [Description]    (hg19-Feb_2009)
GoldenPathTMPO - 12q23.1 [CytoView hg19]  TMPO - 12q23.1 [CytoView hg38]
ImmunoBaseENSG00000120802
Genome Data Viewer NCBITMPO [Mapview hg19]  
OMIM188380   
Gene and transcription
Genbank (Entrez)AA992204 AB209297 AF070631 AF113682 AI055921
RefSeq transcript (Entrez)NM_001032283 NM_001032284 NM_001307975 NM_003276
Consensus coding sequences : CCDS (NCBI)TMPO
Gene ExpressionTMPO [ NCBI-GEO ]   TMPO [ EBI - ARRAY_EXPRESS ]   TMPO [ SEEK ]   TMPO [ MEM ]
Gene Expression Viewer (FireBrowse)TMPO [ Firebrowse - Broad ]
GenevisibleExpression of TMPO in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7112
GTEX Portal (Tissue expression)TMPO
Human Protein AtlasENSG00000120802-TMPO [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42167   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42167  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42167
PhosPhoSitePlusP42167
Domaine pattern : Prosite (Expaxy)LEM (PS50954)    LEM_LIKE (PS50955)   
Domains : Interpro (EBI)LEM-like_dom    LEM/LEM-like_dom_sf    LEM_dom   
Domain families : Pfam (Sanger)LEM (PF03020)    Thymopoietin (PF08198)   
Domain families : Pfam (NCBI)pfam03020    pfam08198   
Domain families : Smart (EMBL)LEM (SM00540)  Thymopoietin (SM01261)  
Conserved Domain (NCBI)TMPO
SuperfamilyP42167
AlphaFold pdb e-kbP42167   
Human Protein Atlas [tissue]ENSG00000120802-TMPO [tissue]
HPRD01777
Protein Interaction databases
DIP (DOE-UCLA)P42167
IntAct (EBI)P42167
BioGRIDTMPO
STRING (EMBL)TMPO
ZODIACTMPO
Ontologies - Pathways
QuickGOP42167
Ontology : AmiGOchromatin  DNA binding  protein binding  lamin binding  nucleus  nuclear envelope  cadherin binding  
Ontology : EGO-EBIchromatin  DNA binding  protein binding  lamin binding  nucleus  nuclear envelope  cadherin binding  
NDEx NetworkTMPO
Atlas of Cancer Signalling NetworkTMPO
Wikipedia pathwaysTMPO
Orthology - Evolution
OrthoDB7112
GeneTree (enSembl)ENSG00000120802
Phylogenetic Trees/Animal Genes : TreeFamTMPO
Homologs : HomoloGeneTMPO
Homology/Alignments : Family Browser (UCSC)TMPO
Gene fusions - Rearrangements
Fusion : QuiverTMPO
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMPO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMPO
dbVarTMPO
ClinVarTMPO
MonarchTMPO
1000_GenomesTMPO 
Exome Variant ServerTMPO
GNOMAD BrowserENSG00000120802
Varsome BrowserTMPO
ACMGTMPO variants
VarityP42167
Genomic Variants (DGV)TMPO [DGVbeta]
DECIPHERTMPO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMPO 
Mutations
ICGC Data PortalTMPO 
TCGA Data PortalTMPO 
Broad Tumor PortalTMPO
OASIS PortalTMPO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMPO  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMPO
Mutations and Diseases : HGMDTMPO
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMPO
DgiDB (Drug Gene Interaction Database)TMPO
DoCM (Curated mutations)TMPO
CIViC (Clinical Interpretations of Variants in Cancer)TMPO
Cancer3DTMPO
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188380   
Orphanet635   
DisGeNETTMPO
MedgenTMPO
Genetic Testing Registry TMPO
NextProtP42167 [Medical]
GENETestsTMPO
Target ValidationTMPO
Huge Navigator TMPO [HugePedia]
ClinGenTMPO (curated)
Clinical trials, drugs, therapy
MyCancerGenomeTMPO
Protein Interactions : CTDTMPO
Pharm GKB GenePA36576
PharosP42167
Clinical trialTMPO
Miscellaneous
canSAR (ICR)TMPO
HarmonizomeTMPO
DataMed IndexTMPO
Probes
Litterature
PubMed187 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMPO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:36 CEST 2021

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