Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMPO (thymopoietin)

Identity

Alias_symbol (synonym)TP
LAP2
LEMD4
Other aliasCMD1T
PRO0868
HGNC (Hugo) TMPO
LocusID (NCBI) 7112
Atlas_Id 45593
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 98515573 and ends at 98550379 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KRT1 (12q13.13) / TMPO (12q23.1)TMPO (12q23.1) / ARPC1A (7q22.1)TMPO (12q23.1) / TMPO (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMPO   11875
LRG (Locus Reference Genomic)LRG_443
Cards
Entrez_Gene (NCBI)TMPO  7112  thymopoietin
AliasesCMD1T; LAP2; LEMD4; PRO0868; 
TP
GeneCards (Weizmann)TMPO
Ensembl hg19 (Hinxton)ENSG00000120802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120802 [Gene_View]  chr12:98515573-98550379 [Contig_View]  TMPO [Vega]
ICGC DataPortalENSG00000120802
TCGA cBioPortalTMPO
AceView (NCBI)TMPO
Genatlas (Paris)TMPO
WikiGenes7112
SOURCE (Princeton)TMPO
Genetics Home Reference (NIH)TMPO
Genomic and cartography
GoldenPath hg38 (UCSC)TMPO  -     chr12:98515573-98550379 +  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMPO  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblTMPO - 12q23.1 [CytoView hg19]  TMPO - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBITMPO [Mapview hg19]  TMPO [Mapview hg38]
OMIM188380   613740   
Gene and transcription
Genbank (Entrez)AA992204 AB209297 AF070631 AF113682 AI055921
RefSeq transcript (Entrez)NM_001032283 NM_001032284 NM_001307975 NM_003276
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMPO
Cluster EST : UnigeneHs.11355 [ NCBI ]
CGAP (NCI)Hs.11355
Alternative Splicing GalleryENSG00000120802
Gene ExpressionTMPO [ NCBI-GEO ]   TMPO [ EBI - ARRAY_EXPRESS ]   TMPO [ SEEK ]   TMPO [ MEM ]
Gene Expression Viewer (FireBrowse)TMPO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7112
GTEX Portal (Tissue expression)TMPO
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42167   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42167  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42167
Splice isoforms : SwissVarP42167
PhosPhoSitePlusP42167
Domaine pattern : Prosite (Expaxy)LEM (PS50954)    LEM_LIKE (PS50955)   
Domains : Interpro (EBI)LEM-like_dom    LEM/LEM-like_dom    LEM_dom   
Domain families : Pfam (Sanger)LEM (PF03020)    Thymopoietin (PF08198)   
Domain families : Pfam (NCBI)pfam03020    pfam08198   
Domain families : Smart (EMBL)LEM (SM00540)  Thymopoietin (SM01261)  
Conserved Domain (NCBI)TMPO
DMDM Disease mutations7112
Blocks (Seattle)TMPO
SuperfamilyP42167
Human Protein AtlasENSG00000120802
Peptide AtlasP42167
HPRD01777
IPIIPI00216230   IPI00030131   IPI00181409   IPI00830089   IPI01024839   IPI01026386   
Protein Interaction databases
DIP (DOE-UCLA)P42167
IntAct (EBI)P42167
FunCoupENSG00000120802
BioGRIDTMPO
STRING (EMBL)TMPO
ZODIACTMPO
Ontologies - Pathways
QuickGOP42167
Ontology : AmiGOchromatin  DNA binding  lamin binding  nucleus  nuclear envelope  regulation of transcription, DNA-templated  cadherin binding  
Ontology : EGO-EBIchromatin  DNA binding  lamin binding  nucleus  nuclear envelope  regulation of transcription, DNA-templated  cadherin binding  
NDEx NetworkTMPO
Atlas of Cancer Signalling NetworkTMPO
Wikipedia pathwaysTMPO
Orthology - Evolution
OrthoDB7112
GeneTree (enSembl)ENSG00000120802
Phylogenetic Trees/Animal Genes : TreeFamTMPO
HOVERGENP42167
HOGENOMP42167
Homologs : HomoloGeneTMPO
Homology/Alignments : Family Browser (UCSC)TMPO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMPO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMPO
dbVarTMPO
ClinVarTMPO
1000_GenomesTMPO 
Exome Variant ServerTMPO
ExAC (Exome Aggregation Consortium)TMPO (select the gene name)
Genetic variants : HAPMAP7112
Genomic Variants (DGV)TMPO [DGVbeta]
DECIPHERTMPO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMPO 
Mutations
ICGC Data PortalTMPO 
TCGA Data PortalTMPO 
Broad Tumor PortalTMPO
OASIS PortalTMPO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMPO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMPO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TMPO
DgiDB (Drug Gene Interaction Database)TMPO
DoCM (Curated mutations)TMPO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMPO (select a term)
intoGenTMPO
Cancer3DTMPO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188380    613740   
Orphanet635   
MedgenTMPO
Genetic Testing Registry TMPO
NextProtP42167 [Medical]
TSGene7112
GENETestsTMPO
Target ValidationTMPO
Huge Navigator TMPO [HugePedia]
snp3D : Map Gene to Disease7112
BioCentury BCIQTMPO
ClinGenTMPO (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7112
Chemical/Pharm GKB GenePA36576
Clinical trialTMPO
Miscellaneous
canSAR (ICR)TMPO (select the gene name)
Probes
Litterature
PubMed103 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMPO
EVEXTMPO
GoPubMedTMPO
iHOPTMPO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:59:51 CEST 2017

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