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TMPRSS11F (transmembrane serine protease 11F)

Identity

Alias (NCBI)HATL4
HGNC (Hugo) TMPRSS11F
HGNC Alias symbFLJ16046
LocusID (NCBI) 389208
Atlas_Id 75011
Location 4q13.2  [Link to chromosome band 4q13]
Location_base_pair Starts at 68053198 and ends at 68129869 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMPRSS11F   29994
Cards
Entrez_Gene (NCBI)TMPRSS11F    transmembrane serine protease 11F
AliasesHATL4
GeneCards (Weizmann)TMPRSS11F
Ensembl hg19 (Hinxton)ENSG00000198092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198092 [Gene_View]  ENSG00000198092 [Sequence]  chr4:68053198-68129869 [Contig_View]  TMPRSS11F [Vega]
ICGC DataPortalENSG00000198092
TCGA cBioPortalTMPRSS11F
AceView (NCBI)TMPRSS11F
Genatlas (Paris)TMPRSS11F
SOURCE (Princeton)TMPRSS11F
Genetics Home Reference (NIH)TMPRSS11F
Genomic and cartography
GoldenPath hg38 (UCSC)TMPRSS11F  -     chr4:68053198-68129869 -  4q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMPRSS11F  -     4q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTMPRSS11F - 4q13.2 [CytoView hg19]  TMPRSS11F - 4q13.2 [CytoView hg38]
ImmunoBaseENSG00000198092
Genome Data Viewer NCBITMPRSS11F [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK122625 DA441628
RefSeq transcript (Entrez)NM_207407
Consensus coding sequences : CCDS (NCBI)TMPRSS11F
Gene ExpressionTMPRSS11F [ NCBI-GEO ]   TMPRSS11F [ EBI - ARRAY_EXPRESS ]   TMPRSS11F [ SEEK ]   TMPRSS11F [ MEM ]
Gene Expression Viewer (FireBrowse)TMPRSS11F [ Firebrowse - Broad ]
GenevisibleExpression of TMPRSS11F in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389208
GTEX Portal (Tissue expression)TMPRSS11F
Human Protein AtlasENSG00000198092-TMPRSS11F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZWK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZWK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZWK6
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ6ZWK6
Domaine pattern : Prosite (Expaxy)SEA (PS50024)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Pept_S1A_HAT/DESC1    Peptidase_S1_PA    Peptidase_S1_PA_chymotrypsin    Peptidase_S1A    SEA_dom    SEA_dom_sf    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)SEA (PF01390)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam01390    pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)TMPRSS11F
SuperfamilyQ6ZWK6
AlphaFold pdb e-kbQ6ZWK6   
Human Protein Atlas [tissue]ENSG00000198092-TMPRSS11F [tissue]
HPRD16908
Protein Interaction databases
DIP (DOE-UCLA)Q6ZWK6
IntAct (EBI)Q6ZWK6
BioGRIDTMPRSS11F
STRING (EMBL)TMPRSS11F
ZODIACTMPRSS11F
Ontologies - Pathways
QuickGOQ6ZWK6
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  integral component of plasma membrane  proteolysis  cell surface  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  integral component of plasma membrane  proteolysis  cell surface  
NDEx NetworkTMPRSS11F
Atlas of Cancer Signalling NetworkTMPRSS11F
Wikipedia pathwaysTMPRSS11F
Orthology - Evolution
OrthoDB389208
GeneTree (enSembl)ENSG00000198092
Phylogenetic Trees/Animal Genes : TreeFamTMPRSS11F
Homologs : HomoloGeneTMPRSS11F
Homology/Alignments : Family Browser (UCSC)TMPRSS11F
Gene fusions - Rearrangements
Fusion : QuiverTMPRSS11F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMPRSS11F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMPRSS11F
dbVarTMPRSS11F
ClinVarTMPRSS11F
MonarchTMPRSS11F
1000_GenomesTMPRSS11F 
Exome Variant ServerTMPRSS11F
GNOMAD BrowserENSG00000198092
Varsome BrowserTMPRSS11F
ACMGTMPRSS11F variants
VarityQ6ZWK6
Genomic Variants (DGV)TMPRSS11F [DGVbeta]
DECIPHERTMPRSS11F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMPRSS11F 
Mutations
ICGC Data PortalTMPRSS11F 
TCGA Data PortalTMPRSS11F 
Broad Tumor PortalTMPRSS11F
OASIS PortalTMPRSS11F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMPRSS11F  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMPRSS11F
Mutations and Diseases : HGMDTMPRSS11F
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMPRSS11F
DgiDB (Drug Gene Interaction Database)TMPRSS11F
DoCM (Curated mutations)TMPRSS11F
CIViC (Clinical Interpretations of Variants in Cancer)TMPRSS11F
Cancer3DTMPRSS11F
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMPRSS11F
MedgenTMPRSS11F
Genetic Testing Registry TMPRSS11F
NextProtQ6ZWK6 [Medical]
GENETestsTMPRSS11F
Target ValidationTMPRSS11F
Huge Navigator TMPRSS11F [HugePedia]
ClinGenTMPRSS11F
Clinical trials, drugs, therapy
MyCancerGenomeTMPRSS11F
Protein Interactions : CTDTMPRSS11F
Pharm GKB GenePA142670730
PharosQ6ZWK6
Clinical trialTMPRSS11F
Miscellaneous
canSAR (ICR)TMPRSS11F
HarmonizomeTMPRSS11F
DataMed IndexTMPRSS11F
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMPRSS11F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:25 CEST 2021

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