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TMPRSS11F (transmembrane protease, serine 11F)

Identity

Alias_symbol (synonym)FLJ16046
Other alias-
HGNC (Hugo) TMPRSS11F
LocusID (NCBI) 389208
Atlas_Id 75011
Location 4q13.2  [Link to chromosome band 4q13]
Location_base_pair Starts at 68918916 and ends at 68995587 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMPRSS11F   29994
Cards
Entrez_Gene (NCBI)TMPRSS11F  389208  transmembrane protease, serine 11F
Aliases
GeneCards (Weizmann)TMPRSS11F
Ensembl hg19 (Hinxton)ENSG00000198092 [Gene_View]  chr4:68918916-68995587 [Contig_View]  TMPRSS11F [Vega]
Ensembl hg38 (Hinxton)ENSG00000198092 [Gene_View]  chr4:68918916-68995587 [Contig_View]  TMPRSS11F [Vega]
ICGC DataPortalENSG00000198092
TCGA cBioPortalTMPRSS11F
AceView (NCBI)TMPRSS11F
Genatlas (Paris)TMPRSS11F
WikiGenes389208
SOURCE (Princeton)TMPRSS11F
Genetics Home Reference (NIH)TMPRSS11F
Genomic and cartography
GoldenPath hg19 (UCSC)TMPRSS11F  -     chr4:68918916-68995587 -  4q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMPRSS11F  -     4q13.2   [Description]    (hg38-Dec_2013)
EnsemblTMPRSS11F - 4q13.2 [CytoView hg19]  TMPRSS11F - 4q13.2 [CytoView hg38]
Mapping of homologs : NCBITMPRSS11F [Mapview hg19]  TMPRSS11F [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122625 DA441628
RefSeq transcript (Entrez)NM_207407
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)TMPRSS11F
Cluster EST : UnigeneHs.677557 [ NCBI ]
CGAP (NCI)Hs.677557
Alternative Splicing GalleryENSG00000198092
Gene ExpressionTMPRSS11F [ NCBI-GEO ]   TMPRSS11F [ EBI - ARRAY_EXPRESS ]   TMPRSS11F [ SEEK ]   TMPRSS11F [ MEM ]
Gene Expression Viewer (FireBrowse)TMPRSS11F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389208
GTEX Portal (Tissue expression)TMPRSS11F
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZWK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZWK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZWK6
Splice isoforms : SwissVarQ6ZWK6
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusQ6ZWK6
Domaine pattern : Prosite (Expaxy)SEA (PS50024)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Pept_S1A_HAT/DESC1    Peptidase_S1    Peptidase_S1_AS    Peptidase_S1A    SEA_dom    Trypsin-like_Pept_dom   
Domain families : Pfam (Sanger)SEA (PF01390)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam01390    pfam00089   
Domain families : Smart (EMBL)SEA (SM00200)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)TMPRSS11F
DMDM Disease mutations389208
Blocks (Seattle)TMPRSS11F
SuperfamilyQ6ZWK6
Human Protein AtlasENSG00000198092
Peptide AtlasQ6ZWK6
HPRD16908
IPIIPI00410473   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZWK6
IntAct (EBI)Q6ZWK6
FunCoupENSG00000198092
BioGRIDTMPRSS11F
STRING (EMBL)TMPRSS11F
ZODIACTMPRSS11F
Ontologies - Pathways
QuickGOQ6ZWK6
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  integral component of plasma membrane  proteolysis  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  integral component of plasma membrane  proteolysis  
NDEx NetworkTMPRSS11F
Atlas of Cancer Signalling NetworkTMPRSS11F
Wikipedia pathwaysTMPRSS11F
Orthology - Evolution
OrthoDB389208
GeneTree (enSembl)ENSG00000198092
Phylogenetic Trees/Animal Genes : TreeFamTMPRSS11F
HOVERGENQ6ZWK6
HOGENOMQ6ZWK6
Homologs : HomoloGeneTMPRSS11F
Homology/Alignments : Family Browser (UCSC)TMPRSS11F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMPRSS11F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMPRSS11F
dbVarTMPRSS11F
ClinVarTMPRSS11F
1000_GenomesTMPRSS11F 
Exome Variant ServerTMPRSS11F
ExAC (Exome Aggregation Consortium)TMPRSS11F (select the gene name)
Genetic variants : HAPMAP389208
Genomic Variants (DGV)TMPRSS11F [DGVbeta]
DECIPHER (Syndromes)4:68918916-68995587  ENSG00000198092
CONAN: Copy Number AnalysisTMPRSS11F 
Mutations
ICGC Data PortalTMPRSS11F 
TCGA Data PortalTMPRSS11F 
Broad Tumor PortalTMPRSS11F
OASIS PortalTMPRSS11F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMPRSS11F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMPRSS11F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMPRSS11F
DgiDB (Drug Gene Interaction Database)TMPRSS11F
DoCM (Curated mutations)TMPRSS11F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMPRSS11F (select a term)
intoGenTMPRSS11F
Cancer3DTMPRSS11F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMPRSS11F
Genetic Testing Registry TMPRSS11F
NextProtQ6ZWK6 [Medical]
TSGene389208
GENETestsTMPRSS11F
Huge Navigator TMPRSS11F [HugePedia]
snp3D : Map Gene to Disease389208
BioCentury BCIQTMPRSS11F
ClinGenTMPRSS11F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389208
Chemical/Pharm GKB GenePA142670730
Clinical trialTMPRSS11F
Miscellaneous
canSAR (ICR)TMPRSS11F (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMPRSS11F
EVEXTMPRSS11F
GoPubMedTMPRSS11F
iHOPTMPRSS11F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:11 CET 2017

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