Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMPRSS13 (transmembrane serine protease 13)

Identity

Alias (NCBI)MSP
MSPL
MSPS
TMPRSS11
HGNC (Hugo) TMPRSS13
HGNC Alias symbMSPL
HGNC Previous nameTMPRSS11
HGNC Previous nametransmembrane protease, serine 11
LocusID (NCBI) 84000
Atlas_Id 75014
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 117903042 and ends at 117929402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TMPRSS13   29808
Cards
Entrez_Gene (NCBI)TMPRSS13    transmembrane serine protease 13
AliasesMSP; MSPL; MSPS; TMPRSS11
GeneCards (Weizmann)TMPRSS13
Ensembl hg19 (Hinxton)ENSG00000137747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137747 [Gene_View]  ENSG00000137747 [Sequence]  chr11:117903042-117929402 [Contig_View]  TMPRSS13 [Vega]
ICGC DataPortalENSG00000137747
TCGA cBioPortalTMPRSS13
AceView (NCBI)TMPRSS13
Genatlas (Paris)TMPRSS13
SOURCE (Princeton)TMPRSS13
Genetics Home Reference (NIH)TMPRSS13
Genomic and cartography
GoldenPath hg38 (UCSC)TMPRSS13  -     chr11:117903042-117929402 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMPRSS13  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathTMPRSS13 - 11q23.3 [CytoView hg19]  TMPRSS13 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000137747
Genome Data Viewer NCBITMPRSS13 [Mapview hg19]  
OMIM610050   
Gene and transcription
Genbank (Entrez)AB048796 AB048797 AK027798 AK300283 AW014913
RefSeq transcript (Entrez)NM_001077263 NM_001206789 NM_001206790 NM_001244995 NM_032046
Consensus coding sequences : CCDS (NCBI)TMPRSS13
Gene ExpressionTMPRSS13 [ NCBI-GEO ]   TMPRSS13 [ EBI - ARRAY_EXPRESS ]   TMPRSS13 [ SEEK ]   TMPRSS13 [ MEM ]
Gene Expression Viewer (FireBrowse)TMPRSS13 [ Firebrowse - Broad ]
GenevisibleExpression of TMPRSS13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84000
GTEX Portal (Tissue expression)TMPRSS13
Human Protein AtlasENSG00000137747-TMPRSS13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMPRSS13
Human Protein Atlas [tissue]ENSG00000137747-TMPRSS13 [tissue]
HPRD07493
Protein Interaction databases
BioGRIDTMPRSS13
STRING (EMBL)TMPRSS13
ZODIACTMPRSS13
Ontologies - Pathways
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMPRSS13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:26 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.