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TMPRSS13 (transmembrane protease, serine 13)

Identity

Alias_namesTMPRSS11
transmembrane protease, serine 11
Alias_symbol (synonym)MSPL
Other aliasMSP
MSPS
HGNC (Hugo) TMPRSS13
LocusID (NCBI) 84000
Atlas_Id 75014
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 117771356 and ends at 117800168 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMPRSS13   29808
Cards
Entrez_Gene (NCBI)TMPRSS13  84000  transmembrane protease, serine 13
AliasesMSP; MSPL; MSPS; TMPRSS11
GeneCards (Weizmann)TMPRSS13
Ensembl hg19 (Hinxton)ENSG00000137747 [Gene_View]  chr11:117771356-117800168 [Contig_View]  TMPRSS13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137747 [Gene_View]  chr11:117771356-117800168 [Contig_View]  TMPRSS13 [Vega]
ICGC DataPortalENSG00000137747
TCGA cBioPortalTMPRSS13
AceView (NCBI)TMPRSS13
Genatlas (Paris)TMPRSS13
WikiGenes84000
SOURCE (Princeton)TMPRSS13
Genetics Home Reference (NIH)TMPRSS13
Genomic and cartography
GoldenPath hg19 (UCSC)TMPRSS13  -     chr11:117771356-117800168 -  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMPRSS13  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblTMPRSS13 - 11q23.3 [CytoView hg19]  TMPRSS13 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBITMPRSS13 [Mapview hg19]  TMPRSS13 [Mapview hg38]
OMIM610050   
Gene and transcription
Genbank (Entrez)AB048796 AB048797 AK027798 AK300283 AW014913
RefSeq transcript (Entrez)NM_001077263 NM_001206789 NM_001206790 NM_001244995 NM_032046
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_030336 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)TMPRSS13
Cluster EST : UnigeneHs.266308 [ NCBI ]
CGAP (NCI)Hs.266308
Alternative Splicing GalleryENSG00000137747
Gene ExpressionTMPRSS13 [ NCBI-GEO ]   TMPRSS13 [ EBI - ARRAY_EXPRESS ]   TMPRSS13 [ SEEK ]   TMPRSS13 [ MEM ]
Gene Expression Viewer (FireBrowse)TMPRSS13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84000
GTEX Portal (Tissue expression)TMPRSS13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYE2
Splice isoforms : SwissVarQ9BYE2
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusQ9BYE2
Domaine pattern : Prosite (Expaxy)SRCR_2 (PS50287)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)LDrepeatLR_classA_rpt    Peptidase_S1    Peptidase_S1_AS    Peptidase_S1A    Peptidase_S1A_TMPRSS13    SRCR    SRCR-like_dom    Trypsin-like_Pept_dom   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)LDLa (SM00192)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)TMPRSS13
DMDM Disease mutations84000
Blocks (Seattle)TMPRSS13
SuperfamilyQ9BYE2
Human Protein AtlasENSG00000137747
Peptide AtlasQ9BYE2
HPRD07493
IPIIPI01008987   IPI00012505   IPI01008955   IPI00973291   IPI00942788   IPI00982058   IPI00872703   IPI01008979   IPI00000848   IPI00554657   IPI00981409   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYE2
IntAct (EBI)Q9BYE2
FunCoupENSG00000137747
BioGRIDTMPRSS13
STRING (EMBL)TMPRSS13
ZODIACTMPRSS13
Ontologies - Pathways
QuickGOQ9BYE2
Ontology : AmiGOserine-type endopeptidase activity  scavenger receptor activity  proteolysis  receptor-mediated endocytosis  integral component of membrane  blood microparticle  
Ontology : EGO-EBIserine-type endopeptidase activity  scavenger receptor activity  proteolysis  receptor-mediated endocytosis  integral component of membrane  blood microparticle  
Pathways : KEGGInfluenza A   
NDEx NetworkTMPRSS13
Atlas of Cancer Signalling NetworkTMPRSS13
Wikipedia pathwaysTMPRSS13
Orthology - Evolution
OrthoDB84000
GeneTree (enSembl)ENSG00000137747
Phylogenetic Trees/Animal Genes : TreeFamTMPRSS13
HOVERGENQ9BYE2
HOGENOMQ9BYE2
Homologs : HomoloGeneTMPRSS13
Homology/Alignments : Family Browser (UCSC)TMPRSS13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMPRSS13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMPRSS13
dbVarTMPRSS13
ClinVarTMPRSS13
1000_GenomesTMPRSS13 
Exome Variant ServerTMPRSS13
ExAC (Exome Aggregation Consortium)TMPRSS13 (select the gene name)
Genetic variants : HAPMAP84000
Genomic Variants (DGV)TMPRSS13 [DGVbeta]
DECIPHER (Syndromes)11:117771356-117800168  ENSG00000137747
CONAN: Copy Number AnalysisTMPRSS13 
Mutations
ICGC Data PortalTMPRSS13 
TCGA Data PortalTMPRSS13 
Broad Tumor PortalTMPRSS13
OASIS PortalTMPRSS13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMPRSS13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMPRSS13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMPRSS13
DgiDB (Drug Gene Interaction Database)TMPRSS13
DoCM (Curated mutations)TMPRSS13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMPRSS13 (select a term)
intoGenTMPRSS13
Cancer3DTMPRSS13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610050   
Orphanet
MedgenTMPRSS13
Genetic Testing Registry TMPRSS13
NextProtQ9BYE2 [Medical]
TSGene84000
GENETestsTMPRSS13
Huge Navigator TMPRSS13 [HugePedia]
snp3D : Map Gene to Disease84000
BioCentury BCIQTMPRSS13
ClinGenTMPRSS13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84000
Chemical/Pharm GKB GenePA142670732
Clinical trialTMPRSS13
Miscellaneous
canSAR (ICR)TMPRSS13 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMPRSS13
EVEXTMPRSS13
GoPubMedTMPRSS13
iHOPTMPRSS13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:11 CET 2017

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