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TMPRSS7 (transmembrane serine protease 7)

Identity

Alias (NCBI)-
HGNC (Hugo) TMPRSS7
HGNC Alias namematriptase-3
HGNC Previous nametype II transmembrane serine protease 7
 transmembrane protease, serine 7
LocusID (NCBI) 344805
Atlas_Id 55549
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112042978 and ends at 112081165 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HSPE1 (2q33.1) / TMPRSS7 (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMPRSS7   30846
Cards
Entrez_Gene (NCBI)TMPRSS7    transmembrane serine protease 7
Aliases
GeneCards (Weizmann)TMPRSS7
Ensembl hg19 (Hinxton)ENSG00000176040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176040 [Gene_View]  ENSG00000176040 [Sequence]  chr3:112042978-112081165 [Contig_View]  TMPRSS7 [Vega]
ICGC DataPortalENSG00000176040
TCGA cBioPortalTMPRSS7
AceView (NCBI)TMPRSS7
Genatlas (Paris)TMPRSS7
SOURCE (Princeton)TMPRSS7
Genetics Home Reference (NIH)TMPRSS7
Genomic and cartography
GoldenPath hg38 (UCSC)TMPRSS7  -     chr3:112042978-112081165 +  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMPRSS7  -     3q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTMPRSS7 - 3q13.2 [CytoView hg19]  TMPRSS7 - 3q13.2 [CytoView hg38]
ImmunoBaseENSG00000176040
Genome Data Viewer NCBITMPRSS7 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK131211 BC117322 BN000125
RefSeq transcript (Entrez)NM_001042575 NM_001366279
Consensus coding sequences : CCDS (NCBI)TMPRSS7
Gene ExpressionTMPRSS7 [ NCBI-GEO ]   TMPRSS7 [ EBI - ARRAY_EXPRESS ]   TMPRSS7 [ SEEK ]   TMPRSS7 [ MEM ]
Gene Expression Viewer (FireBrowse)TMPRSS7 [ Firebrowse - Broad ]
GenevisibleExpression of TMPRSS7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344805
GTEX Portal (Tissue expression)TMPRSS7
Human Protein AtlasENSG00000176040-TMPRSS7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTY8
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ7RTY8
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    LDLRA_1 (PS01209)    LDLRA_2 (PS50068)    SEA (PS50024)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)CUB_dom    LDL_receptor-like_sf    LDLR_class-A_CS    LDrepeatLR_classA_rpt    Peptidase_S1_PA    Peptidase_S1_PA_chymotrypsin    Peptidase_S1A    SEA_dom    SEA_dom_sf    Sperma_CUB_dom_sf    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)CUB (PF00431)    Ldl_recept_a (PF00057)    SEA (PF01390)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00431    pfam00057    pfam01390    pfam00089   
Domain families : Smart (EMBL)CUB (SM00042)  LDLa (SM00192)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)TMPRSS7
SuperfamilyQ7RTY8
AlphaFold pdb e-kbQ7RTY8   
Human Protein Atlas [tissue]ENSG00000176040-TMPRSS7 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q7RTY8
IntAct (EBI)Q7RTY8
BioGRIDTMPRSS7
STRING (EMBL)TMPRSS7
ZODIACTMPRSS7
Ontologies - Pathways
QuickGOQ7RTY8
Ontology : AmiGOserine-type endopeptidase activity  plasma membrane  plasma membrane  proteolysis  serine-type peptidase activity  integral component of membrane  
Ontology : EGO-EBIserine-type endopeptidase activity  plasma membrane  plasma membrane  proteolysis  serine-type peptidase activity  integral component of membrane  
NDEx NetworkTMPRSS7
Atlas of Cancer Signalling NetworkTMPRSS7
Wikipedia pathwaysTMPRSS7
Orthology - Evolution
OrthoDB344805
GeneTree (enSembl)ENSG00000176040
Phylogenetic Trees/Animal Genes : TreeFamTMPRSS7
Homologs : HomoloGeneTMPRSS7
Homology/Alignments : Family Browser (UCSC)TMPRSS7
Gene fusions - Rearrangements
Fusion : QuiverTMPRSS7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMPRSS7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMPRSS7
dbVarTMPRSS7
ClinVarTMPRSS7
MonarchTMPRSS7
1000_GenomesTMPRSS7 
Exome Variant ServerTMPRSS7
GNOMAD BrowserENSG00000176040
Varsome BrowserTMPRSS7
ACMGTMPRSS7 variants
VarityQ7RTY8
Genomic Variants (DGV)TMPRSS7 [DGVbeta]
DECIPHERTMPRSS7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMPRSS7 
Mutations
ICGC Data PortalTMPRSS7 
TCGA Data PortalTMPRSS7 
Broad Tumor PortalTMPRSS7
OASIS PortalTMPRSS7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMPRSS7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMPRSS7
Mutations and Diseases : HGMDTMPRSS7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMPRSS7
DgiDB (Drug Gene Interaction Database)TMPRSS7
DoCM (Curated mutations)TMPRSS7
CIViC (Clinical Interpretations of Variants in Cancer)TMPRSS7
Cancer3DTMPRSS7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMPRSS7
MedgenTMPRSS7
Genetic Testing Registry TMPRSS7
NextProtQ7RTY8 [Medical]
GENETestsTMPRSS7
Target ValidationTMPRSS7
Huge Navigator TMPRSS7 [HugePedia]
ClinGenTMPRSS7
Clinical trials, drugs, therapy
MyCancerGenomeTMPRSS7
Protein Interactions : CTDTMPRSS7
Pharm GKB GenePA134928796
PharosQ7RTY8
Clinical trialTMPRSS7
Miscellaneous
canSAR (ICR)TMPRSS7
HarmonizomeTMPRSS7
DataMed IndexTMPRSS7
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMPRSS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:38 CEST 2021

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