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TMPRSS9 (transmembrane protease, serine 9)

Identity

Other alias-
HGNC (Hugo) TMPRSS9
LocusID (NCBI) 360200
Atlas_Id 75018
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2389784 and ends at 2426086 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MED1 (17q12) / TMPRSS9 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMPRSS9   30079
Cards
Entrez_Gene (NCBI)TMPRSS9  360200  transmembrane protease, serine 9
Aliases
GeneCards (Weizmann)TMPRSS9
Ensembl hg19 (Hinxton)ENSG00000178297 [Gene_View]  chr19:2389784-2426086 [Contig_View]  TMPRSS9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178297 [Gene_View]  chr19:2389784-2426086 [Contig_View]  TMPRSS9 [Vega]
ICGC DataPortalENSG00000178297
TCGA cBioPortalTMPRSS9
AceView (NCBI)TMPRSS9
Genatlas (Paris)TMPRSS9
WikiGenes360200
SOURCE (Princeton)TMPRSS9
Genetics Home Reference (NIH)TMPRSS9
Genomic and cartography
GoldenPath hg19 (UCSC)TMPRSS9  -     chr19:2389784-2426086 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMPRSS9  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblTMPRSS9 - 19p13.3 [CytoView hg19]  TMPRSS9 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBITMPRSS9 [Mapview hg19]  TMPRSS9 [Mapview hg38]
OMIM610477   
Gene and transcription
Genbank (Entrez)AB109390 AJ488946 AJ488947 AK131261 BC140386
RefSeq transcript (Entrez)NM_182973
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)TMPRSS9
Cluster EST : UnigeneHs.465560 [ NCBI ]
CGAP (NCI)Hs.465560
Alternative Splicing GalleryENSG00000178297
Gene ExpressionTMPRSS9 [ NCBI-GEO ]   TMPRSS9 [ EBI - ARRAY_EXPRESS ]   TMPRSS9 [ SEEK ]   TMPRSS9 [ MEM ]
Gene Expression Viewer (FireBrowse)TMPRSS9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)360200
GTEX Portal (Tissue expression)TMPRSS9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z410   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z410  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z410
Splice isoforms : SwissVarQ7Z410
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusQ7Z410
Domaine pattern : Prosite (Expaxy)LDLRA_1 (PS01209)    LDLRA_2 (PS50068)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)LDrepeatLR_classA_rpt    Peptidase_S1    Peptidase_S1_AS    Peptidase_S1A    Tmprss9    Trypsin-like_Pept_dom   
Domain families : Pfam (Sanger)Ldl_recept_a (PF00057)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00057    pfam00089   
Domain families : Smart (EMBL)LDLa (SM00192)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)TMPRSS9
DMDM Disease mutations360200
Blocks (Seattle)TMPRSS9
SuperfamilyQ7Z410
Human Protein AtlasENSG00000178297
Peptide AtlasQ7Z410
HPRD07124
IPIIPI00337305   IPI00554603   IPI00789769   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z410
IntAct (EBI)Q7Z410
FunCoupENSG00000178297
BioGRIDTMPRSS9
STRING (EMBL)TMPRSS9
ZODIACTMPRSS9
Ontologies - Pathways
QuickGOQ7Z410
Ontology : AmiGOserine-type endopeptidase activity  integral component of plasma membrane  plasminogen activation  
Ontology : EGO-EBIserine-type endopeptidase activity  integral component of plasma membrane  plasminogen activation  
NDEx NetworkTMPRSS9
Atlas of Cancer Signalling NetworkTMPRSS9
Wikipedia pathwaysTMPRSS9
Orthology - Evolution
OrthoDB360200
GeneTree (enSembl)ENSG00000178297
Phylogenetic Trees/Animal Genes : TreeFamTMPRSS9
HOVERGENQ7Z410
HOGENOMQ7Z410
Homologs : HomoloGeneTMPRSS9
Homology/Alignments : Family Browser (UCSC)TMPRSS9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMPRSS9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMPRSS9
dbVarTMPRSS9
ClinVarTMPRSS9
1000_GenomesTMPRSS9 
Exome Variant ServerTMPRSS9
ExAC (Exome Aggregation Consortium)TMPRSS9 (select the gene name)
Genetic variants : HAPMAP360200
Genomic Variants (DGV)TMPRSS9 [DGVbeta]
DECIPHER (Syndromes)19:2389784-2426086  ENSG00000178297
CONAN: Copy Number AnalysisTMPRSS9 
Mutations
ICGC Data PortalTMPRSS9 
TCGA Data PortalTMPRSS9 
Broad Tumor PortalTMPRSS9
OASIS PortalTMPRSS9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMPRSS9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMPRSS9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMPRSS9
DgiDB (Drug Gene Interaction Database)TMPRSS9
DoCM (Curated mutations)TMPRSS9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMPRSS9 (select a term)
intoGenTMPRSS9
Cancer3DTMPRSS9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610477   
Orphanet
MedgenTMPRSS9
Genetic Testing Registry TMPRSS9
NextProtQ7Z410 [Medical]
TSGene360200
GENETestsTMPRSS9
Huge Navigator TMPRSS9 [HugePedia]
snp3D : Map Gene to Disease360200
BioCentury BCIQTMPRSS9
ClinGenTMPRSS9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD360200
Chemical/Pharm GKB GenePA134967594
Clinical trialTMPRSS9
Miscellaneous
canSAR (ICR)TMPRSS9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMPRSS9
EVEXTMPRSS9
GoPubMedTMPRSS9
iHOPTMPRSS9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:12 CET 2017

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