Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMSB15A (thymosin beta 15a)

Identity

Alias_namesTMSL8
thymosin-like 8
Alias_symbol (synonym)TMSNB
Other aliasTMSB15
TMSB15B
Tb15
TbNB
HGNC (Hugo) TMSB15A
LocusID (NCBI) 11013
Atlas_Id 50006
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 101768610 and ends at 101771699 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMSB15A   30744
Cards
Entrez_Gene (NCBI)TMSB15A  11013  thymosin beta 15a
AliasesTMSB15; TMSB15B; TMSL8; TMSNB; 
Tb15; TbNB
GeneCards (Weizmann)TMSB15A
Ensembl hg19 (Hinxton)ENSG00000158164 [Gene_View]  chrX:101768610-101771699 [Contig_View]  TMSB15A [Vega]
Ensembl hg38 (Hinxton)ENSG00000158164 [Gene_View]  chrX:101768610-101771699 [Contig_View]  TMSB15A [Vega]
ICGC DataPortalENSG00000158164
TCGA cBioPortalTMSB15A
AceView (NCBI)TMSB15A
Genatlas (Paris)TMSB15A
WikiGenes11013
SOURCE (Princeton)TMSB15A
Genetics Home Reference (NIH)TMSB15A
Genomic and cartography
GoldenPath hg19 (UCSC)TMSB15A  -     chrX:101768610-101771699 -  Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMSB15A  -     Xq22.1   [Description]    (hg38-Dec_2013)
EnsemblTMSB15A - Xq22.1 [CytoView hg19]  TMSB15A - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBITMSB15A [Mapview hg19]  TMSB15A [Mapview hg38]
OMIM300939   
Gene and transcription
Genbank (Entrez)AF086495 BC000183 BG829126 BU599402 D82345
RefSeq transcript (Entrez)NM_021992
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)TMSB15A
Cluster EST : UnigeneHs.56145 [ NCBI ]
CGAP (NCI)Hs.56145
Alternative Splicing GalleryENSG00000158164
Gene ExpressionTMSB15A [ NCBI-GEO ]   TMSB15A [ EBI - ARRAY_EXPRESS ]   TMSB15A [ SEEK ]   TMSB15A [ MEM ]
Gene Expression Viewer (FireBrowse)TMSB15A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11013
GTEX Portal (Tissue expression)TMSB15A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG34
Splice isoforms : SwissVarP0CG34
PhosPhoSitePlusP0CG34
Domaine pattern : Prosite (Expaxy)THYMOSIN_B4 (PS00500)   
Domains : Interpro (EBI)Beta-thymosin   
Domain families : Pfam (Sanger)Thymosin (PF01290)   
Domain families : Pfam (NCBI)pfam01290   
Domain families : Smart (EMBL)THY (SM00152)  
Domain structure : Prodom (Prabi Lyon)Thymosin_b4 (PD005116)   
Conserved Domain (NCBI)TMSB15A
DMDM Disease mutations11013
Blocks (Seattle)TMSB15A
SuperfamilyP0CG34
Human Protein AtlasENSG00000158164
Peptide AtlasP0CG34
HPRD06744
IPIIPI00180656   
Protein Interaction databases
DIP (DOE-UCLA)P0CG34
IntAct (EBI)P0CG34
FunCoupENSG00000158164
BioGRIDTMSB15A
STRING (EMBL)TMSB15A
ZODIACTMSB15A
Ontologies - Pathways
QuickGOP0CG34
Ontology : AmiGOactin monomer binding  cytoplasm  cytoskeleton  actin filament organization  
Ontology : EGO-EBIactin monomer binding  cytoplasm  cytoskeleton  actin filament organization  
NDEx NetworkTMSB15A
Atlas of Cancer Signalling NetworkTMSB15A
Wikipedia pathwaysTMSB15A
Orthology - Evolution
OrthoDB11013
GeneTree (enSembl)ENSG00000158164
Phylogenetic Trees/Animal Genes : TreeFamTMSB15A
HOVERGENP0CG34
HOGENOMP0CG34
Homologs : HomoloGeneTMSB15A
Homology/Alignments : Family Browser (UCSC)TMSB15A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMSB15A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMSB15A
dbVarTMSB15A
ClinVarTMSB15A
1000_GenomesTMSB15A 
Exome Variant ServerTMSB15A
ExAC (Exome Aggregation Consortium)TMSB15A (select the gene name)
Genetic variants : HAPMAP11013
Genomic Variants (DGV)TMSB15A [DGVbeta]
DECIPHER (Syndromes)X:101768610-101771699  ENSG00000158164
CONAN: Copy Number AnalysisTMSB15A 
Mutations
ICGC Data PortalTMSB15A 
TCGA Data PortalTMSB15A 
Broad Tumor PortalTMSB15A
OASIS PortalTMSB15A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMSB15A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMSB15A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMSB15A
DgiDB (Drug Gene Interaction Database)TMSB15A
DoCM (Curated mutations)TMSB15A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMSB15A (select a term)
intoGenTMSB15A
Cancer3DTMSB15A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300939   
Orphanet
MedgenTMSB15A
Genetic Testing Registry TMSB15A
NextProtP0CG34 [Medical]
TSGene11013
GENETestsTMSB15A
Huge Navigator TMSB15A [HugePedia]
snp3D : Map Gene to Disease11013
BioCentury BCIQTMSB15A
ClinGenTMSB15A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11013
Chemical/Pharm GKB GenePA164726573
Clinical trialTMSB15A
Miscellaneous
canSAR (ICR)TMSB15A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMSB15A
EVEXTMSB15A
GoPubMedTMSB15A
iHOPTMSB15A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:35 CET 2017

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