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TMSB4Y (thymosin beta 4 Y-linked)

Identity

Alias (NCBI)TB4Y
HGNC (Hugo) TMSB4Y
HGNC Alias symbTB4Y
HGNC Previous namethymosin, beta 4, Y chromosome
LocusID (NCBI) 9087
Atlas_Id 56685
Location Yq11.221  [Link to chromosome band Yq11]
Location_base_pair Starts at 13703899 and ends at 13706022 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMSB4Y (Yq11.221) / KALP ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMSB4Y   11882
Cards
Entrez_Gene (NCBI)TMSB4Y    thymosin beta 4 Y-linked
AliasesTB4Y
GeneCards (Weizmann)TMSB4Y
Ensembl hg19 (Hinxton)ENSG00000154620 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154620 [Gene_View]  ENSG00000154620 [Sequence]  chrY:13703899-13706022 [Contig_View]  TMSB4Y [Vega]
ICGC DataPortalENSG00000154620
TCGA cBioPortalTMSB4Y
AceView (NCBI)TMSB4Y
Genatlas (Paris)TMSB4Y
SOURCE (Princeton)TMSB4Y
Genetics Home Reference (NIH)TMSB4Y
Genomic and cartography
GoldenPath hg38 (UCSC)TMSB4Y  -     chrY:13703899-13706022 +  Yq11.221   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMSB4Y  -     Yq11.221   [Description]    (hg19-Feb_2009)
GoldenPathTMSB4Y - Yq11.221 [CytoView hg19]  TMSB4Y - Yq11.221 [CytoView hg38]
ImmunoBaseENSG00000154620
Genome Data Viewer NCBITMSB4Y [Mapview hg19]  
OMIM400017   
Gene and transcription
Genbank (Entrez)AF000989 BC022482 BC119763 BC119764
RefSeq transcript (Entrez)NM_004202
Consensus coding sequences : CCDS (NCBI)TMSB4Y
Gene ExpressionTMSB4Y [ NCBI-GEO ]   TMSB4Y [ EBI - ARRAY_EXPRESS ]   TMSB4Y [ SEEK ]   TMSB4Y [ MEM ]
Gene Expression Viewer (FireBrowse)TMSB4Y [ Firebrowse - Broad ]
GenevisibleExpression of TMSB4Y in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9087
GTEX Portal (Tissue expression)TMSB4Y
Human Protein AtlasENSG00000154620-TMSB4Y [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14604   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14604  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14604
PhosPhoSitePlusO14604
Domaine pattern : Prosite (Expaxy)THYMOSIN_B4 (PS00500)   
Domains : Interpro (EBI)Beta-thymosin    Beta-thymosin_sf   
Domain families : Pfam (Sanger)Thymosin (PF01290)   
Domain families : Pfam (NCBI)pfam01290   
Domain families : Smart (EMBL)THY (SM00152)  
Conserved Domain (NCBI)TMSB4Y
SuperfamilyO14604
AlphaFold pdb e-kbO14604   
Human Protein Atlas [tissue]ENSG00000154620-TMSB4Y [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O14604
IntAct (EBI)O14604
BioGRIDTMSB4Y
STRING (EMBL)TMSB4Y
ZODIACTMSB4Y
Ontologies - Pathways
QuickGOO14604
Ontology : AmiGOactin monomer binding  protein binding  nucleus  cytoplasm  cytosol  cytoskeleton  actin filament organization  regulation of actin polymerization or depolymerization  regulation of cell migration  sequestering of actin monomers  
Ontology : EGO-EBIactin monomer binding  protein binding  nucleus  cytoplasm  cytosol  cytoskeleton  actin filament organization  regulation of actin polymerization or depolymerization  regulation of cell migration  sequestering of actin monomers  
Pathways : KEGGRegulation of actin cytoskeleton   
NDEx NetworkTMSB4Y
Atlas of Cancer Signalling NetworkTMSB4Y
Wikipedia pathwaysTMSB4Y
Orthology - Evolution
OrthoDB9087
GeneTree (enSembl)ENSG00000154620
Phylogenetic Trees/Animal Genes : TreeFamTMSB4Y
Homologs : HomoloGeneTMSB4Y
Homology/Alignments : Family Browser (UCSC)TMSB4Y
Gene fusions - Rearrangements
Fusion : QuiverTMSB4Y
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMSB4Y [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMSB4Y
dbVarTMSB4Y
ClinVarTMSB4Y
MonarchTMSB4Y
1000_GenomesTMSB4Y 
Exome Variant ServerTMSB4Y
GNOMAD BrowserENSG00000154620
Varsome BrowserTMSB4Y
ACMGTMSB4Y variants
VarityO14604
Genomic Variants (DGV)TMSB4Y [DGVbeta]
DECIPHERTMSB4Y [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMSB4Y 
Mutations
ICGC Data PortalTMSB4Y 
TCGA Data PortalTMSB4Y 
Broad Tumor PortalTMSB4Y
OASIS PortalTMSB4Y [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMSB4Y  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMSB4Y
Mutations and Diseases : HGMDTMSB4Y
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMSB4Y
DgiDB (Drug Gene Interaction Database)TMSB4Y
DoCM (Curated mutations)TMSB4Y
CIViC (Clinical Interpretations of Variants in Cancer)TMSB4Y
Cancer3DTMSB4Y
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400017   
Orphanet
DisGeNETTMSB4Y
MedgenTMSB4Y
Genetic Testing Registry TMSB4Y
NextProtO14604 [Medical]
GENETestsTMSB4Y
Target ValidationTMSB4Y
Huge Navigator TMSB4Y [HugePedia]
ClinGenTMSB4Y
Clinical trials, drugs, therapy
MyCancerGenomeTMSB4Y
Protein Interactions : CTDTMSB4Y
Pharm GKB GenePA36582
PharosO14604
Clinical trialTMSB4Y
Miscellaneous
canSAR (ICR)TMSB4Y
HarmonizomeTMSB4Y
DataMed IndexTMSB4Y
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMSB4Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:38 CEST 2021

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