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TMSB4Y (thymosin beta 4, Y-linked)

Identity

Other aliasTB4Y
HGNC (Hugo) TMSB4Y
LocusID (NCBI) 9087
Atlas_Id 56685
Location Yq11.221  [Link to chromosome band Yq11]
Location_base_pair Starts at 15815447 and ends at 15817902 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMSB4Y (Yq11.221) / KALP ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMSB4Y   11882
Cards
Entrez_Gene (NCBI)TMSB4Y  9087  thymosin beta 4, Y-linked
AliasesTB4Y
GeneCards (Weizmann)TMSB4Y
Ensembl hg19 (Hinxton) [Gene_View]  chrY:15815447-15817902 [Contig_View]  TMSB4Y [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrY:15815447-15817902 [Contig_View]  TMSB4Y [Vega]
TCGA cBioPortalTMSB4Y
AceView (NCBI)TMSB4Y
Genatlas (Paris)TMSB4Y
WikiGenes9087
SOURCE (Princeton)TMSB4Y
Genetics Home Reference (NIH)TMSB4Y
Genomic and cartography
GoldenPath hg19 (UCSC)TMSB4Y  -     chrY:15815447-15817902 +  Yq11.221   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMSB4Y  -     Yq11.221   [Description]    (hg38-Dec_2013)
EnsemblTMSB4Y - Yq11.221 [CytoView hg19]  TMSB4Y - Yq11.221 [CytoView hg38]
Mapping of homologs : NCBITMSB4Y [Mapview hg19]  TMSB4Y [Mapview hg38]
OMIM400017   
Gene and transcription
Genbank (Entrez)AF000989 BC022482 BC119763 BC119764
RefSeq transcript (Entrez)NM_004202
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMSB4Y
Cluster EST : UnigeneHs.159201 [ NCBI ]
CGAP (NCI)Hs.159201
Gene ExpressionTMSB4Y [ NCBI-GEO ]   TMSB4Y [ EBI - ARRAY_EXPRESS ]   TMSB4Y [ SEEK ]   TMSB4Y [ MEM ]
Gene Expression Viewer (FireBrowse)TMSB4Y [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9087
GTEX Portal (Tissue expression)TMSB4Y
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14604   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14604  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14604
Splice isoforms : SwissVarO14604
PhosPhoSitePlusO14604
Domaine pattern : Prosite (Expaxy)THYMOSIN_B4 (PS00500)   
Domains : Interpro (EBI)Beta-thymosin   
Domain families : Pfam (Sanger)Thymosin (PF01290)   
Domain families : Pfam (NCBI)pfam01290   
Domain families : Smart (EMBL)THY (SM00152)  
Domain structure : Prodom (Prabi Lyon)Thymosin_b4 (PD005116)   
Conserved Domain (NCBI)TMSB4Y
DMDM Disease mutations9087
Blocks (Seattle)TMSB4Y
SuperfamilyO14604
Peptide AtlasO14604
IPIIPI00219803   
Protein Interaction databases
DIP (DOE-UCLA)O14604
IntAct (EBI)O14604
BioGRIDTMSB4Y
STRING (EMBL)TMSB4Y
ZODIACTMSB4Y
Ontologies - Pathways
QuickGOO14604
Ontology : AmiGOactin monomer binding  protein binding  cytoplasm  actin filament organization  regulation of actin polymerization or depolymerization  filamentous actin  sequestering of actin monomers  
Ontology : EGO-EBIactin monomer binding  protein binding  cytoplasm  actin filament organization  regulation of actin polymerization or depolymerization  filamentous actin  sequestering of actin monomers  
Pathways : KEGGRegulation of actin cytoskeleton   
NDEx NetworkTMSB4Y
Atlas of Cancer Signalling NetworkTMSB4Y
Wikipedia pathwaysTMSB4Y
Orthology - Evolution
OrthoDB9087
Phylogenetic Trees/Animal Genes : TreeFamTMSB4Y
HOVERGENO14604
HOGENOMO14604
Homologs : HomoloGeneTMSB4Y
Homology/Alignments : Family Browser (UCSC)TMSB4Y
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMSB4Y [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMSB4Y
dbVarTMSB4Y
ClinVarTMSB4Y
1000_GenomesTMSB4Y 
Exome Variant ServerTMSB4Y
ExAC (Exome Aggregation Consortium)TMSB4Y (select the gene name)
Genetic variants : HAPMAP9087
Genomic Variants (DGV)TMSB4Y [DGVbeta]
DECIPHER (Syndromes)Y:15815447-15817902  
CONAN: Copy Number AnalysisTMSB4Y 
Mutations
ICGC Data PortalTMSB4Y 
TCGA Data PortalTMSB4Y 
Broad Tumor PortalTMSB4Y
OASIS PortalTMSB4Y [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMSB4Y  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMSB4Y
BioMutasearch TMSB4Y
DgiDB (Drug Gene Interaction Database)TMSB4Y
DoCM (Curated mutations)TMSB4Y (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMSB4Y (select a term)
intoGenTMSB4Y
Cancer3DTMSB4Y(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400017   
Orphanet
MedgenTMSB4Y
Genetic Testing Registry TMSB4Y
NextProtO14604 [Medical]
TSGene9087
GENETestsTMSB4Y
Huge Navigator TMSB4Y [HugePedia]
snp3D : Map Gene to Disease9087
BioCentury BCIQTMSB4Y
ClinGenTMSB4Y
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9087
Chemical/Pharm GKB GenePA36582
Clinical trialTMSB4Y
Miscellaneous
canSAR (ICR)TMSB4Y (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMSB4Y
EVEXTMSB4Y
GoPubMedTMSB4Y
iHOPTMSB4Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:51 CEST 2017

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