Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMTC4 (transmembrane and tetratricopeptide repeat containing 4)

Identity

Alias_symbol (synonym)FLJ14624
FLJ22153
Other alias-
HGNC (Hugo) TMTC4
LocusID (NCBI) 84899
Atlas_Id 75024
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 100603836 and ends at 100674935 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
STK24 (13q32.2) / TMTC4 (13q32.3)TMTC4 (13q32.3) / ADGRL3 (4q13.1)TMTC4 (13q32.3) / FGF14 (13q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMTC4   25904
Cards
Entrez_Gene (NCBI)TMTC4  84899  transmembrane and tetratricopeptide repeat containing 4
Aliases
GeneCards (Weizmann)TMTC4
Ensembl hg19 (Hinxton)ENSG00000125247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125247 [Gene_View]  chr13:100603836-100674935 [Contig_View]  TMTC4 [Vega]
ICGC DataPortalENSG00000125247
TCGA cBioPortalTMTC4
AceView (NCBI)TMTC4
Genatlas (Paris)TMTC4
WikiGenes84899
SOURCE (Princeton)TMTC4
Genetics Home Reference (NIH)TMTC4
Genomic and cartography
GoldenPath hg38 (UCSC)TMTC4  -     chr13:100603836-100674935 -  13q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMTC4  -     13q32.3   [Description]    (hg19-Feb_2009)
EnsemblTMTC4 - 13q32.3 [CytoView hg19]  TMTC4 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBITMTC4 [Mapview hg19]  TMTC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF339792 AK027530 AK056409 AK092653 AK124599
RefSeq transcript (Entrez)NM_001079669 NM_001286453 NM_001350571 NM_001350572 NM_001350574 NM_001350576 NM_001350577 NM_032813
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMTC4
Cluster EST : UnigeneHs.190983 [ NCBI ]
CGAP (NCI)Hs.190983
Alternative Splicing GalleryENSG00000125247
Gene ExpressionTMTC4 [ NCBI-GEO ]   TMTC4 [ EBI - ARRAY_EXPRESS ]   TMTC4 [ SEEK ]   TMTC4 [ MEM ]
Gene Expression Viewer (FireBrowse)TMTC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84899
GTEX Portal (Tissue expression)TMTC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4D3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4D3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4D3
Splice isoforms : SwissVarQ5T4D3
PhosPhoSitePlusQ5T4D3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)DUF1736    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)DUF1736 (PF08409)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam08409    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TMTC4
DMDM Disease mutations84899
Blocks (Seattle)TMTC4
SuperfamilyQ5T4D3
Human Protein AtlasENSG00000125247
Peptide AtlasQ5T4D3
HPRD07864
IPIIPI00646732   IPI00514153   IPI00953037   IPI00643584   IPI00953129   IPI01014860   IPI00942152   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4D3
IntAct (EBI)Q5T4D3
FunCoupENSG00000125247
BioGRIDTMTC4
STRING (EMBL)TMTC4
ZODIACTMTC4
Ontologies - Pathways
QuickGOQ5T4D3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMTC4
Atlas of Cancer Signalling NetworkTMTC4
Wikipedia pathwaysTMTC4
Orthology - Evolution
OrthoDB84899
GeneTree (enSembl)ENSG00000125247
Phylogenetic Trees/Animal Genes : TreeFamTMTC4
HOVERGENQ5T4D3
HOGENOMQ5T4D3
Homologs : HomoloGeneTMTC4
Homology/Alignments : Family Browser (UCSC)TMTC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMTC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMTC4
dbVarTMTC4
ClinVarTMTC4
1000_GenomesTMTC4 
Exome Variant ServerTMTC4
ExAC (Exome Aggregation Consortium)TMTC4 (select the gene name)
Genetic variants : HAPMAP84899
Genomic Variants (DGV)TMTC4 [DGVbeta]
DECIPHERTMTC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMTC4 
Mutations
ICGC Data PortalTMTC4 
TCGA Data PortalTMTC4 
Broad Tumor PortalTMTC4
OASIS PortalTMTC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMTC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMTC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMTC4
DgiDB (Drug Gene Interaction Database)TMTC4
DoCM (Curated mutations)TMTC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMTC4 (select a term)
intoGenTMTC4
Cancer3DTMTC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMTC4
Genetic Testing Registry TMTC4
NextProtQ5T4D3 [Medical]
TSGene84899
GENETestsTMTC4
Huge Navigator TMTC4 [HugePedia]
snp3D : Map Gene to Disease84899
BioCentury BCIQTMTC4
ClinGenTMTC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84899
Chemical/Pharm GKB GenePA142670721
Clinical trialTMTC4
Miscellaneous
canSAR (ICR)TMTC4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMTC4
EVEXTMTC4
GoPubMedTMTC4
iHOPTMTC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:59:07 CEST 2017

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