Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMUB1 (transmembrane and ubiquitin like domain containing 1)

Identity

Alias (NCBI)C7orf21
DULP
HOPS
SB144
HGNC (Hugo) TMUB1
HGNC Alias symbSB144
HGNC Previous nameC7orf21
HGNC Previous namechromosome 7 open reading frame 21
 transmembrane and ubiquitin-like domain containing 1
LocusID (NCBI) 83590
Atlas_Id 75025
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151081085 and ends at 151083019 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMUB1 (7q36.1) / HOXC8 (12q13.13)TMUB1 (7q36.1) / PCBP2 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMUB1   21709
Cards
Entrez_Gene (NCBI)TMUB1    transmembrane and ubiquitin like domain containing 1
AliasesC7orf21; DULP; HOPS; SB144
GeneCards (Weizmann)TMUB1
Ensembl hg19 (Hinxton)ENSG00000164897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164897 [Gene_View]  ENSG00000164897 [Sequence]  chr7:151081085-151083019 [Contig_View]  TMUB1 [Vega]
ICGC DataPortalENSG00000164897
TCGA cBioPortalTMUB1
AceView (NCBI)TMUB1
Genatlas (Paris)TMUB1
SOURCE (Princeton)TMUB1
Genetics Home Reference (NIH)TMUB1
Genomic and cartography
GoldenPath hg38 (UCSC)TMUB1  -     chr7:151081085-151083019 -  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMUB1  -     7q36.1   [Description]    (hg19-Feb_2009)
GoldenPathTMUB1 - 7q36.1 [CytoView hg19]  TMUB1 - 7q36.1 [CytoView hg38]
ImmunoBaseENSG00000164897
Genome Data Viewer NCBITMUB1 [Mapview hg19]  
OMIM614792   
Gene and transcription
Genbank (Entrez)AK314035 AY037155 AY358481 AY603380 BC000936
RefSeq transcript (Entrez)NM_001136044 NM_031434
Consensus coding sequences : CCDS (NCBI)TMUB1
Gene ExpressionTMUB1 [ NCBI-GEO ]   TMUB1 [ EBI - ARRAY_EXPRESS ]   TMUB1 [ SEEK ]   TMUB1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMUB1 [ Firebrowse - Broad ]
GenevisibleExpression of TMUB1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83590
GTEX Portal (Tissue expression)TMUB1
Human Protein AtlasENSG00000164897-TMUB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVT8
PhosPhoSitePlusQ9BVT8
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)TMUB1/2    Ubiquitin-like_dom    Ubiquitin-like_domsf   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Conserved Domain (NCBI)TMUB1
SuperfamilyQ9BVT8
AlphaFold pdb e-kbQ9BVT8   
Human Protein Atlas [tissue]ENSG00000164897-TMUB1 [tissue]
HPRD12910
Protein Interaction databases
DIP (DOE-UCLA)Q9BVT8
IntAct (EBI)Q9BVT8
BioGRIDTMUB1
STRING (EMBL)TMUB1
ZODIACTMUB1
Ontologies - Pathways
QuickGOQ9BVT8
Ontology : AmiGOprotein binding  nucleolus  microtubule organizing center  integral component of membrane  ubiquitin-dependent ERAD pathway  ubiquitin-dependent ERAD pathway  postsynaptic membrane  recycling endosome  
Ontology : EGO-EBIprotein binding  nucleolus  microtubule organizing center  integral component of membrane  ubiquitin-dependent ERAD pathway  ubiquitin-dependent ERAD pathway  postsynaptic membrane  recycling endosome  
NDEx NetworkTMUB1
Atlas of Cancer Signalling NetworkTMUB1
Wikipedia pathwaysTMUB1
Orthology - Evolution
OrthoDB83590
GeneTree (enSembl)ENSG00000164897
Phylogenetic Trees/Animal Genes : TreeFamTMUB1
Homologs : HomoloGeneTMUB1
Homology/Alignments : Family Browser (UCSC)TMUB1
Gene fusions - Rearrangements
Fusion : QuiverTMUB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMUB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMUB1
dbVarTMUB1
ClinVarTMUB1
MonarchTMUB1
1000_GenomesTMUB1 
Exome Variant ServerTMUB1
GNOMAD BrowserENSG00000164897
Varsome BrowserTMUB1
ACMGTMUB1 variants
VarityQ9BVT8
Genomic Variants (DGV)TMUB1 [DGVbeta]
DECIPHERTMUB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMUB1 
Mutations
ICGC Data PortalTMUB1 
TCGA Data PortalTMUB1 
Broad Tumor PortalTMUB1
OASIS PortalTMUB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMUB1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMUB1
Mutations and Diseases : HGMDTMUB1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMUB1
DgiDB (Drug Gene Interaction Database)TMUB1
DoCM (Curated mutations)TMUB1
CIViC (Clinical Interpretations of Variants in Cancer)TMUB1
Cancer3DTMUB1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614792   
Orphanet
DisGeNETTMUB1
MedgenTMUB1
Genetic Testing Registry TMUB1
NextProtQ9BVT8 [Medical]
GENETestsTMUB1
Target ValidationTMUB1
Huge Navigator TMUB1 [HugePedia]
ClinGenTMUB1
Clinical trials, drugs, therapy
MyCancerGenomeTMUB1
Protein Interactions : CTDTMUB1
Pharm GKB GenePA134863959
PharosQ9BVT8
Clinical trialTMUB1
Miscellaneous
canSAR (ICR)TMUB1
HarmonizomeTMUB1
DataMed IndexTMUB1
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMUB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:28 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.