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TMUB1 (transmembrane and ubiquitin-like domain containing 1)

Identity

Alias_namesC7orf21
chromosome 7 open reading frame 21
transmembrane and ubiquitin-like domain containing 1
Alias_symbol (synonym)SB144
Other aliasDULP
HGNC (Hugo) TMUB1
LocusID (NCBI) 83590
Atlas_Id 75025
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150778172 and ends at 150780620 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMUB1 (7q36.1) / HOXC8 (12q13.13)TMUB1 (7q36.1) / PCBP2 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMUB1   21709
Cards
Entrez_Gene (NCBI)TMUB1  83590  transmembrane and ubiquitin-like domain containing 1
AliasesC7orf21; DULP; SB144
GeneCards (Weizmann)TMUB1
Ensembl hg19 (Hinxton)ENSG00000164897 [Gene_View]  chr7:150778172-150780620 [Contig_View]  TMUB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164897 [Gene_View]  chr7:150778172-150780620 [Contig_View]  TMUB1 [Vega]
ICGC DataPortalENSG00000164897
TCGA cBioPortalTMUB1
AceView (NCBI)TMUB1
Genatlas (Paris)TMUB1
WikiGenes83590
SOURCE (Princeton)TMUB1
Genetics Home Reference (NIH)TMUB1
Genomic and cartography
GoldenPath hg19 (UCSC)TMUB1  -     chr7:150778172-150780620 -  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMUB1  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblTMUB1 - 7q36.1 [CytoView hg19]  TMUB1 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBITMUB1 [Mapview hg19]  TMUB1 [Mapview hg38]
OMIM614792   
Gene and transcription
Genbank (Entrez)AK314035 AY037155 AY358481 AY603380 BC000936
RefSeq transcript (Entrez)NM_001136044 NM_031434
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)TMUB1
Cluster EST : UnigeneHs.726215 [ NCBI ]
CGAP (NCI)Hs.726215
Alternative Splicing GalleryENSG00000164897
Gene ExpressionTMUB1 [ NCBI-GEO ]   TMUB1 [ EBI - ARRAY_EXPRESS ]   TMUB1 [ SEEK ]   TMUB1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMUB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83590
GTEX Portal (Tissue expression)TMUB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVT8
Splice isoforms : SwissVarQ9BVT8
PhosPhoSitePlusQ9BVT8
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin-like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)TMUB1
DMDM Disease mutations83590
Blocks (Seattle)TMUB1
SuperfamilyQ9BVT8
Human Protein AtlasENSG00000164897
Peptide AtlasQ9BVT8
HPRD12910
IPIIPI00027773   IPI00944933   IPI00945079   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVT8
IntAct (EBI)Q9BVT8
FunCoupENSG00000164897
BioGRIDTMUB1
STRING (EMBL)TMUB1
ZODIACTMUB1
Ontologies - Pathways
QuickGOQ9BVT8
Ontology : AmiGOnucleoplasm  cytoplasm  integral component of membrane  ER-associated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBInucleoplasm  cytoplasm  integral component of membrane  ER-associated ubiquitin-dependent protein catabolic process  
NDEx NetworkTMUB1
Atlas of Cancer Signalling NetworkTMUB1
Wikipedia pathwaysTMUB1
Orthology - Evolution
OrthoDB83590
GeneTree (enSembl)ENSG00000164897
Phylogenetic Trees/Animal Genes : TreeFamTMUB1
HOVERGENQ9BVT8
HOGENOMQ9BVT8
Homologs : HomoloGeneTMUB1
Homology/Alignments : Family Browser (UCSC)TMUB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMUB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMUB1
dbVarTMUB1
ClinVarTMUB1
1000_GenomesTMUB1 
Exome Variant ServerTMUB1
ExAC (Exome Aggregation Consortium)TMUB1 (select the gene name)
Genetic variants : HAPMAP83590
Genomic Variants (DGV)TMUB1 [DGVbeta]
DECIPHER (Syndromes)7:150778172-150780620  ENSG00000164897
CONAN: Copy Number AnalysisTMUB1 
Mutations
ICGC Data PortalTMUB1 
TCGA Data PortalTMUB1 
Broad Tumor PortalTMUB1
OASIS PortalTMUB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMUB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMUB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMUB1
DgiDB (Drug Gene Interaction Database)TMUB1
DoCM (Curated mutations)TMUB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMUB1 (select a term)
intoGenTMUB1
Cancer3DTMUB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614792   
Orphanet
MedgenTMUB1
Genetic Testing Registry TMUB1
NextProtQ9BVT8 [Medical]
TSGene83590
GENETestsTMUB1
Huge Navigator TMUB1 [HugePedia]
snp3D : Map Gene to Disease83590
BioCentury BCIQTMUB1
ClinGenTMUB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83590
Chemical/Pharm GKB GenePA134863959
Clinical trialTMUB1
Miscellaneous
canSAR (ICR)TMUB1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMUB1
EVEXTMUB1
GoPubMedTMUB1
iHOPTMUB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:49:13 CET 2017

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