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TMUB2 (transmembrane and ubiquitin like domain containing 2)

Identity

Alias_namestransmembrane and ubiquitin-like domain containing 2
Alias_symbol (synonym)MGC3123
Other aliasFP2653
HGNC (Hugo) TMUB2
LocusID (NCBI) 79089
Atlas_Id 75026
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44186986 and ends at 44191731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMUB2 (17q21.31) / TMUB2 (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMUB2   28459
Cards
Entrez_Gene (NCBI)TMUB2  79089  transmembrane and ubiquitin like domain containing 2
AliasesFP2653
GeneCards (Weizmann)TMUB2
Ensembl hg19 (Hinxton)ENSG00000168591 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168591 [Gene_View]  chr17:44186986-44191731 [Contig_View]  TMUB2 [Vega]
ICGC DataPortalENSG00000168591
TCGA cBioPortalTMUB2
AceView (NCBI)TMUB2
Genatlas (Paris)TMUB2
WikiGenes79089
SOURCE (Princeton)TMUB2
Genetics Home Reference (NIH)TMUB2
Genomic and cartography
GoldenPath hg38 (UCSC)TMUB2  -     chr17:44186986-44191731 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMUB2  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblTMUB2 - 17q21.31 [CytoView hg19]  TMUB2 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBITMUB2 [Mapview hg19]  TMUB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF289564 AF370373 AK021759 AK096631 AK294198
RefSeq transcript (Entrez)NM_001076674 NM_001330235 NM_024107 NM_177441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMUB2
Cluster EST : UnigeneHs.181391 [ NCBI ]
CGAP (NCI)Hs.181391
Alternative Splicing GalleryENSG00000168591
Gene ExpressionTMUB2 [ NCBI-GEO ]   TMUB2 [ EBI - ARRAY_EXPRESS ]   TMUB2 [ SEEK ]   TMUB2 [ MEM ]
Gene Expression Viewer (FireBrowse)TMUB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79089
GTEX Portal (Tissue expression)TMUB2
Human Protein AtlasENSG00000168591-TMUB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71RG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71RG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71RG4
Splice isoforms : SwissVarQ71RG4
PhosPhoSitePlusQ71RG4
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)TMUB2
DMDM Disease mutations79089
Blocks (Seattle)TMUB2
SuperfamilyQ71RG4
Human Protein Atlas [tissue]ENSG00000168591-TMUB2 [tissue]
Peptide AtlasQ71RG4
HPRD14542
IPIIPI00743888   IPI00760551   IPI00760873   IPI00012210   IPI00909916   IPI00383277   
Protein Interaction databases
DIP (DOE-UCLA)Q71RG4
IntAct (EBI)Q71RG4
FunCoupENSG00000168591
BioGRIDTMUB2
STRING (EMBL)TMUB2
ZODIACTMUB2
Ontologies - Pathways
QuickGOQ71RG4
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMUB2
Atlas of Cancer Signalling NetworkTMUB2
Wikipedia pathwaysTMUB2
Orthology - Evolution
OrthoDB79089
GeneTree (enSembl)ENSG00000168591
Phylogenetic Trees/Animal Genes : TreeFamTMUB2
HOVERGENQ71RG4
HOGENOMQ71RG4
Homologs : HomoloGeneTMUB2
Homology/Alignments : Family Browser (UCSC)TMUB2
Gene fusions - Rearrangements
Fusion: Tumor Portal TMUB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMUB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMUB2
dbVarTMUB2
ClinVarTMUB2
1000_GenomesTMUB2 
Exome Variant ServerTMUB2
ExAC (Exome Aggregation Consortium)ENSG00000168591
GNOMAD BrowserENSG00000168591
Genetic variants : HAPMAP79089
Genomic Variants (DGV)TMUB2 [DGVbeta]
DECIPHERTMUB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMUB2 
Mutations
ICGC Data PortalTMUB2 
TCGA Data PortalTMUB2 
Broad Tumor PortalTMUB2
OASIS PortalTMUB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMUB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMUB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMUB2
DgiDB (Drug Gene Interaction Database)TMUB2
DoCM (Curated mutations)TMUB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMUB2 (select a term)
intoGenTMUB2
Cancer3DTMUB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMUB2
Genetic Testing Registry TMUB2
NextProtQ71RG4 [Medical]
TSGene79089
GENETestsTMUB2
Target ValidationTMUB2
Huge Navigator TMUB2 [HugePedia]
snp3D : Map Gene to Disease79089
BioCentury BCIQTMUB2
ClinGenTMUB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79089
Chemical/Pharm GKB GenePA145147917
Clinical trialTMUB2
Miscellaneous
canSAR (ICR)TMUB2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMUB2
EVEXTMUB2
GoPubMedTMUB2
iHOPTMUB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 12:33:28 CET 2017

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