Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMX2-CTNND1 (TMX2-CTNND1 readthrough (NMD candidate))

Identity

Other alias-
HGNC (Hugo) TMX2-CTNND1
LocusID (NCBI) 100528016
Atlas_Id 75029
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57712523 and ends at 57819180 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KMT2A (11q23.3) / TMX2-CTNND1 (11q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMX2-CTNND1   41992
Cards
Entrez_Gene (NCBI)TMX2-CTNND1  100528016  TMX2-CTNND1 readthrough (NMD candidate)
Aliases
GeneCards (Weizmann)TMX2-CTNND1
Ensembl hg19 (Hinxton)ENSG00000254462 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254462 [Gene_View]  chr11:57712523-57819180 [Contig_View]  TMX2-CTNND1 [Vega]
ICGC DataPortalENSG00000254462
TCGA cBioPortalTMX2-CTNND1
AceView (NCBI)TMX2-CTNND1
Genatlas (Paris)TMX2-CTNND1
WikiGenes100528016
SOURCE (Princeton)TMX2-CTNND1
Genetics Home Reference (NIH)TMX2-CTNND1
Genomic and cartography
GoldenPath hg38 (UCSC)TMX2-CTNND1  -     chr11:57712523-57819180 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMX2-CTNND1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblTMX2-CTNND1 - 11q12.1 [CytoView hg19]  TMX2-CTNND1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBITMX2-CTNND1 [Mapview hg19]  TMX2-CTNND1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002382
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMX2-CTNND1
Cluster EST : UnigeneHs.166011 [ NCBI ]
CGAP (NCI)Hs.166011
Alternative Splicing GalleryENSG00000254462
Gene ExpressionTMX2-CTNND1 [ NCBI-GEO ]   TMX2-CTNND1 [ EBI - ARRAY_EXPRESS ]   TMX2-CTNND1 [ SEEK ]   TMX2-CTNND1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMX2-CTNND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100528016
GTEX Portal (Tissue expression)TMX2-CTNND1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMX2-CTNND1
DMDM Disease mutations100528016
Blocks (Seattle)TMX2-CTNND1
Human Protein AtlasENSG00000254462
Protein Interaction databases
FunCoupENSG00000254462
BioGRIDTMX2-CTNND1
STRING (EMBL)TMX2-CTNND1
ZODIACTMX2-CTNND1
Ontologies - Pathways
Huge Navigator TMX2-CTNND1 [HugePedia]
snp3D : Map Gene to Disease100528016
BioCentury BCIQTMX2-CTNND1
ClinGenTMX2-CTNND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100528016
Clinical trialTMX2-CTNND1
Miscellaneous
canSAR (ICR)TMX2-CTNND1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMX2-CTNND1
EVEXTMX2-CTNND1
GoPubMedTMX2-CTNND1
iHOPTMX2-CTNND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:12 CEST 2017

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