Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMX4 (thioredoxin related transmembrane protein 4)

Identity

Alias (NCBI)DJ971N18.2
PDIA14
TXNDC13
HGNC (Hugo) TMX4
HGNC Alias symbDJ971N18.2
KIAA1162
PDIA14
HGNC Alias nameprotein disulfide isomerase family A, member 14
HGNC Previous nameTXNDC13
HGNC Previous namethioredoxin domain containing 13
 thioredoxin-related transmembrane protein 4
LocusID (NCBI) 56255
Atlas_Id 75031
Location 20p12.3  [Link to chromosome band 20p12]
Location_base_pair Starts at 7977346 and ends at 8019761 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMX4   25237
Cards
Entrez_Gene (NCBI)TMX4    thioredoxin related transmembrane protein 4
AliasesDJ971N18.2; PDIA14; TXNDC13
GeneCards (Weizmann)TMX4
Ensembl hg19 (Hinxton)ENSG00000125827 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125827 [Gene_View]  ENSG00000125827 [Sequence]  chr20:7977346-8019761 [Contig_View]  TMX4 [Vega]
ICGC DataPortalENSG00000125827
TCGA cBioPortalTMX4
AceView (NCBI)TMX4
Genatlas (Paris)TMX4
SOURCE (Princeton)TMX4
Genetics Home Reference (NIH)TMX4
Genomic and cartography
GoldenPath hg38 (UCSC)TMX4  -     chr20:7977346-8019761 -  20p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMX4  -     20p12.3   [Description]    (hg19-Feb_2009)
GoldenPathTMX4 - 20p12.3 [CytoView hg19]  TMX4 - 20p12.3 [CytoView hg38]
ImmunoBaseENSG00000125827
Genome Data Viewer NCBITMX4 [Mapview hg19]  
OMIM616766   
Gene and transcription
Genbank (Entrez)AB032988 AK074838 AK075404 AK226005 AL118494
RefSeq transcript (Entrez)NM_021156
Consensus coding sequences : CCDS (NCBI)TMX4
Gene ExpressionTMX4 [ NCBI-GEO ]   TMX4 [ EBI - ARRAY_EXPRESS ]   TMX4 [ SEEK ]   TMX4 [ MEM ]
Gene Expression Viewer (FireBrowse)TMX4 [ Firebrowse - Broad ]
GenevisibleExpression of TMX4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56255
GTEX Portal (Tissue expression)TMX4
Human Protein AtlasENSG00000125827-TMX4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1E5
PhosPhoSitePlusQ9H1E5
Domaine pattern : Prosite (Expaxy)THIOREDOXIN_1 (PS00194)    THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)Thioredoxin-like_sf    Thioredoxin_CS    Thioredoxin_domain   
Domain families : Pfam (Sanger)Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam00085   
Conserved Domain (NCBI)TMX4
SuperfamilyQ9H1E5
AlphaFold pdb e-kbQ9H1E5   
Human Protein Atlas [tissue]ENSG00000125827-TMX4 [tissue]
HPRD11128
Protein Interaction databases
DIP (DOE-UCLA)Q9H1E5
IntAct (EBI)Q9H1E5
BioGRIDTMX4
STRING (EMBL)TMX4
ZODIACTMX4
Ontologies - Pathways
QuickGOQ9H1E5
Ontology : AmiGOnuclear inner membrane  integral component of membrane  
Ontology : EGO-EBInuclear inner membrane  integral component of membrane  
NDEx NetworkTMX4
Atlas of Cancer Signalling NetworkTMX4
Wikipedia pathwaysTMX4
Orthology - Evolution
OrthoDB56255
GeneTree (enSembl)ENSG00000125827
Phylogenetic Trees/Animal Genes : TreeFamTMX4
Homologs : HomoloGeneTMX4
Homology/Alignments : Family Browser (UCSC)TMX4
Gene fusions - Rearrangements
Fusion : QuiverTMX4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMX4
dbVarTMX4
ClinVarTMX4
MonarchTMX4
1000_GenomesTMX4 
Exome Variant ServerTMX4
GNOMAD BrowserENSG00000125827
Varsome BrowserTMX4
ACMGTMX4 variants
VarityQ9H1E5
Genomic Variants (DGV)TMX4 [DGVbeta]
DECIPHERTMX4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMX4 
Mutations
ICGC Data PortalTMX4 
TCGA Data PortalTMX4 
Broad Tumor PortalTMX4
OASIS PortalTMX4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMX4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMX4
Mutations and Diseases : HGMDTMX4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMX4
DgiDB (Drug Gene Interaction Database)TMX4
DoCM (Curated mutations)TMX4
CIViC (Clinical Interpretations of Variants in Cancer)TMX4
Cancer3DTMX4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616766   
Orphanet
DisGeNETTMX4
MedgenTMX4
Genetic Testing Registry TMX4
NextProtQ9H1E5 [Medical]
GENETestsTMX4
Target ValidationTMX4
Huge Navigator TMX4 [HugePedia]
ClinGenTMX4
Clinical trials, drugs, therapy
MyCancerGenomeTMX4
Protein Interactions : CTDTMX4
Pharm GKB GenePA164726669
PharosQ9H1E5
Clinical trialTMX4
Miscellaneous
canSAR (ICR)TMX4
HarmonizomeTMX4
DataMed IndexTMX4
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:28 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.