Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMX4 (thioredoxin-related transmembrane protein 4)

Identity

Alias_namesTXNDC13
thioredoxin domain containing 13
thioredoxin-related transmembrane protein 4
Alias_symbol (synonym)DJ971N18.2
KIAA1162
PDIA14
Other alias
HGNC (Hugo) TMX4
LocusID (NCBI) 56255
Atlas_Id 75031
Location 20p12.3  [Link to chromosome band 20p12]
Location_base_pair Starts at 7958000 and ends at 8000476 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMX4   25237
Cards
Entrez_Gene (NCBI)TMX4  56255  thioredoxin-related transmembrane protein 4
AliasesDJ971N18.2; PDIA14; TXNDC13
GeneCards (Weizmann)TMX4
Ensembl hg19 (Hinxton)ENSG00000125827 [Gene_View]  chr20:7958000-8000476 [Contig_View]  TMX4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125827 [Gene_View]  chr20:7958000-8000476 [Contig_View]  TMX4 [Vega]
ICGC DataPortalENSG00000125827
TCGA cBioPortalTMX4
AceView (NCBI)TMX4
Genatlas (Paris)TMX4
WikiGenes56255
SOURCE (Princeton)TMX4
Genetics Home Reference (NIH)TMX4
Genomic and cartography
GoldenPath hg19 (UCSC)TMX4  -     chr20:7958000-8000476 -  20p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMX4  -     20p12.3   [Description]    (hg38-Dec_2013)
EnsemblTMX4 - 20p12.3 [CytoView hg19]  TMX4 - 20p12.3 [CytoView hg38]
Mapping of homologs : NCBITMX4 [Mapview hg19]  TMX4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB032988 AK074838 AK075404 AK226005 AL118494
RefSeq transcript (Entrez)NM_021156
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)TMX4
Cluster EST : UnigeneHs.169358 [ NCBI ]
CGAP (NCI)Hs.169358
Alternative Splicing GalleryENSG00000125827
Gene ExpressionTMX4 [ NCBI-GEO ]   TMX4 [ EBI - ARRAY_EXPRESS ]   TMX4 [ SEEK ]   TMX4 [ MEM ]
Gene Expression Viewer (FireBrowse)TMX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56255
GTEX Portal (Tissue expression)TMX4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1E5
Splice isoforms : SwissVarQ9H1E5
PhosPhoSitePlusQ9H1E5
Domaine pattern : Prosite (Expaxy)THIOREDOXIN_1 (PS00194)    THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)Thioredoxin-like_fold    Thioredoxin_CS    Thioredoxin_domain   
Domain families : Pfam (Sanger)Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam00085   
Conserved Domain (NCBI)TMX4
DMDM Disease mutations56255
Blocks (Seattle)TMX4
SuperfamilyQ9H1E5
Human Protein AtlasENSG00000125827
Peptide AtlasQ9H1E5
HPRD11128
IPIIPI00100247   IPI00976486   IPI00976194   IPI00979932   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1E5
IntAct (EBI)Q9H1E5
FunCoupENSG00000125827
BioGRIDTMX4
STRING (EMBL)TMX4
ZODIACTMX4
Ontologies - Pathways
QuickGOQ9H1E5
Ontology : AmiGOprotein disulfide isomerase activity  cell  protein folding  integral component of membrane  response to endoplasmic reticulum stress  cell redox homeostasis  oxidation-reduction process  
Ontology : EGO-EBIprotein disulfide isomerase activity  cell  protein folding  integral component of membrane  response to endoplasmic reticulum stress  cell redox homeostasis  oxidation-reduction process  
NDEx NetworkTMX4
Atlas of Cancer Signalling NetworkTMX4
Wikipedia pathwaysTMX4
Orthology - Evolution
OrthoDB56255
GeneTree (enSembl)ENSG00000125827
Phylogenetic Trees/Animal Genes : TreeFamTMX4
HOVERGENQ9H1E5
HOGENOMQ9H1E5
Homologs : HomoloGeneTMX4
Homology/Alignments : Family Browser (UCSC)TMX4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMX4
dbVarTMX4
ClinVarTMX4
1000_GenomesTMX4 
Exome Variant ServerTMX4
ExAC (Exome Aggregation Consortium)TMX4 (select the gene name)
Genetic variants : HAPMAP56255
Genomic Variants (DGV)TMX4 [DGVbeta]
DECIPHER (Syndromes)20:7958000-8000476  ENSG00000125827
CONAN: Copy Number AnalysisTMX4 
Mutations
ICGC Data PortalTMX4 
TCGA Data PortalTMX4 
Broad Tumor PortalTMX4
OASIS PortalTMX4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMX4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMX4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMX4
DgiDB (Drug Gene Interaction Database)TMX4
DoCM (Curated mutations)TMX4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMX4 (select a term)
intoGenTMX4
Cancer3DTMX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMX4
Genetic Testing Registry TMX4
NextProtQ9H1E5 [Medical]
TSGene56255
GENETestsTMX4
Huge Navigator TMX4 [HugePedia]
snp3D : Map Gene to Disease56255
BioCentury BCIQTMX4
ClinGenTMX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56255
Chemical/Pharm GKB GenePA164726669
Clinical trialTMX4
Miscellaneous
canSAR (ICR)TMX4 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMX4
EVEXTMX4
GoPubMedTMX4
iHOPTMX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:49:14 CET 2017

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