Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TNFAIP1 (TNF alpha induced protein 1)

Identity

Alias_namesEDP1
tumor necrosis factor
Alias_symbol (synonym)B61
B12
MGC2317
BTBD34
Other aliashBACURD2
HGNC (Hugo) TNFAIP1
LocusID (NCBI) 7126
Atlas_Id 42598
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28335522 and ends at 28347009 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HNRNPUL2 (11q12.3) / TNFAIP1 (17q11.2)TNFAIP1 (17q11.2) / RBM6 (3p21.31)TNFAIP1 (17q11.2) / TNFAIP1 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNFAIP1   11894
Cards
Entrez_Gene (NCBI)TNFAIP1  7126  TNF alpha induced protein 1
AliasesB12; B61; BTBD34; EDP1; 
hBACURD2
GeneCards (Weizmann)TNFAIP1
Ensembl hg19 (Hinxton)ENSG00000109079 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109079 [Gene_View]  ENSG00000109079 [Sequence]  chr17:28335522-28347009 [Contig_View]  TNFAIP1 [Vega]
ICGC DataPortalENSG00000109079
TCGA cBioPortalTNFAIP1
AceView (NCBI)TNFAIP1
Genatlas (Paris)TNFAIP1
WikiGenes7126
SOURCE (Princeton)TNFAIP1
Genetics Home Reference (NIH)TNFAIP1
Genomic and cartography
GoldenPath hg38 (UCSC)TNFAIP1  -     chr17:28335522-28347009 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFAIP1  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblTNFAIP1 - 17q11.2 [CytoView hg19]  TNFAIP1 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBITNFAIP1 [Mapview hg19]  TNFAIP1 [Mapview hg38]
OMIM191161   
Gene and transcription
Genbank (Entrez)AK300584 AK312387 BC001643 BC001949 BC003694
RefSeq transcript (Entrez)NM_021137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFAIP1
Cluster EST : UnigeneHs.76090 [ NCBI ]
CGAP (NCI)Hs.76090
Alternative Splicing GalleryENSG00000109079
Gene ExpressionTNFAIP1 [ NCBI-GEO ]   TNFAIP1 [ EBI - ARRAY_EXPRESS ]   TNFAIP1 [ SEEK ]   TNFAIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFAIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7126
GTEX Portal (Tissue expression)TNFAIP1
Human Protein AtlasENSG00000109079-TNFAIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13829   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13829  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13829
Splice isoforms : SwissVarQ13829
PhosPhoSitePlusQ13829
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)TNFAIP1
DMDM Disease mutations7126
Blocks (Seattle)TNFAIP1
SuperfamilyQ13829
Human Protein Atlas [tissue]ENSG00000109079-TNFAIP1 [tissue]
Peptide AtlasQ13829
HPRD01856
IPIIPI00015819   IPI01010486   
Protein Interaction databases
DIP (DOE-UCLA)Q13829
IntAct (EBI)Q13829
FunCoupENSG00000109079
BioGRIDTNFAIP1
STRING (EMBL)TNFAIP1
ZODIACTNFAIP1
Ontologies - Pathways
QuickGOQ13829
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  nucleolus  cytoplasm  endosome  DNA replication  apoptotic process  immune response  cell migration  protein ubiquitination  protein ubiquitination  GTP-Rho binding  protein domain specific binding  Cul3-RING ubiquitin ligase complex  negative regulation of Rho protein signal transduction  stress fiber assembly  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of DNA replication  protein homooligomerization  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  nucleolus  cytoplasm  endosome  DNA replication  apoptotic process  immune response  cell migration  protein ubiquitination  protein ubiquitination  GTP-Rho binding  protein domain specific binding  Cul3-RING ubiquitin ligase complex  negative regulation of Rho protein signal transduction  stress fiber assembly  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of DNA replication  protein homooligomerization  
NDEx NetworkTNFAIP1
Atlas of Cancer Signalling NetworkTNFAIP1
Wikipedia pathwaysTNFAIP1
Orthology - Evolution
OrthoDB7126
GeneTree (enSembl)ENSG00000109079
Phylogenetic Trees/Animal Genes : TreeFamTNFAIP1
HOVERGENQ13829
HOGENOMQ13829
Homologs : HomoloGeneTNFAIP1
Homology/Alignments : Family Browser (UCSC)TNFAIP1
Gene fusions - Rearrangements
Fusion : QuiverTNFAIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFAIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFAIP1
dbVarTNFAIP1
ClinVarTNFAIP1
1000_GenomesTNFAIP1 
Exome Variant ServerTNFAIP1
ExAC (Exome Aggregation Consortium)ENSG00000109079
GNOMAD BrowserENSG00000109079
Genetic variants : HAPMAP7126
Genomic Variants (DGV)TNFAIP1 [DGVbeta]
DECIPHERTNFAIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFAIP1 
Mutations
ICGC Data PortalTNFAIP1 
TCGA Data PortalTNFAIP1 
Broad Tumor PortalTNFAIP1
OASIS PortalTNFAIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFAIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNFAIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNFAIP1
DgiDB (Drug Gene Interaction Database)TNFAIP1
DoCM (Curated mutations)TNFAIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNFAIP1 (select a term)
intoGenTNFAIP1
Cancer3DTNFAIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM191161   
Orphanet
DisGeNETTNFAIP1
MedgenTNFAIP1
Genetic Testing Registry TNFAIP1
NextProtQ13829 [Medical]
TSGene7126
GENETestsTNFAIP1
Target ValidationTNFAIP1
Huge Navigator TNFAIP1 [HugePedia]
snp3D : Map Gene to Disease7126
BioCentury BCIQTNFAIP1
ClinGenTNFAIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7126
Chemical/Pharm GKB GenePA36591
Clinical trialTNFAIP1
Miscellaneous
canSAR (ICR)TNFAIP1 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFAIP1
EVEXTNFAIP1
GoPubMedTNFAIP1
iHOPTNFAIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:54:33 CEST 2018
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