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TNFAIP2 (TNF alpha induced protein 2)

Identity

Alias (NCBI)B94
EXOC3L3
HGNC (Hugo) TNFAIP2
HGNC Alias symbB94
EXOC3L3
HGNC Alias nameexocyst complex component 3-like 3
HGNC Previous nametumor necrosis factor, alpha-induced protein 2
LocusID (NCBI) 7127
Atlas_Id 42599
Location 14q32.32  [Link to chromosome band 14q32]
Location_base_pair Starts at 103123461 and ends at 103137439 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TNFAIP2 (14q32.32) / CD2BP2 (16p11.2)TNFAIP2 (14q32.32) / KDM2B (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TNFAIP2   11895
Cards
Entrez_Gene (NCBI)TNFAIP2    TNF alpha induced protein 2
AliasesB94; EXOC3L3
GeneCards (Weizmann)TNFAIP2
Ensembl hg19 (Hinxton)ENSG00000185215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185215 [Gene_View]  ENSG00000185215 [Sequence]  chr14:103123461-103137439 [Contig_View]  TNFAIP2 [Vega]
ICGC DataPortalENSG00000185215
TCGA cBioPortalTNFAIP2
AceView (NCBI)TNFAIP2
Genatlas (Paris)TNFAIP2
SOURCE (Princeton)TNFAIP2
Genetics Home Reference (NIH)TNFAIP2
Genomic and cartography
GoldenPath hg38 (UCSC)TNFAIP2  -     chr14:103123461-103137439 +  14q32.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFAIP2  -     14q32.32   [Description]    (hg19-Feb_2009)
GoldenPathTNFAIP2 - 14q32.32 [CytoView hg19]  TNFAIP2 - 14q32.32 [CytoView hg38]
ImmunoBaseENSG00000185215
Genome Data Viewer NCBITNFAIP2 [Mapview hg19]  
OMIM603300   
Gene and transcription
Genbank (Entrez)AK302929 AK303781 AK309854 AK316496 BC017818
RefSeq transcript (Entrez)NM_001371220 NM_001371221 NM_006291
Consensus coding sequences : CCDS (NCBI)TNFAIP2
Gene ExpressionTNFAIP2 [ NCBI-GEO ]   TNFAIP2 [ EBI - ARRAY_EXPRESS ]   TNFAIP2 [ SEEK ]   TNFAIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFAIP2 [ Firebrowse - Broad ]
GenevisibleExpression of TNFAIP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7127
GTEX Portal (Tissue expression)TNFAIP2
Human Protein AtlasENSG00000185215-TNFAIP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03169   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03169  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03169
PhosPhoSitePlusQ03169
Domains : Interpro (EBI)EXOC3/Sec6   
Domain families : Pfam (Sanger)Sec6 (PF06046)   
Domain families : Pfam (NCBI)pfam06046   
Conserved Domain (NCBI)TNFAIP2
SuperfamilyQ03169
AlphaFold pdb e-kbQ03169   
Human Protein Atlas [tissue]ENSG00000185215-TNFAIP2 [tissue]
HPRD04487
Protein Interaction databases
DIP (DOE-UCLA)Q03169
IntAct (EBI)Q03169
BioGRIDTNFAIP2
STRING (EMBL)TNFAIP2
ZODIACTNFAIP2
Ontologies - Pathways
QuickGOQ03169
Ontology : AmiGOexocyst  SNARE binding  angiogenesis  protein binding  extracellular space  exocytosis  cell differentiation  exocyst localization  
Ontology : EGO-EBIexocyst  SNARE binding  angiogenesis  protein binding  extracellular space  exocytosis  cell differentiation  exocyst localization  
NDEx NetworkTNFAIP2
Atlas of Cancer Signalling NetworkTNFAIP2
Wikipedia pathwaysTNFAIP2
Orthology - Evolution
OrthoDB7127
GeneTree (enSembl)ENSG00000185215
Phylogenetic Trees/Animal Genes : TreeFamTNFAIP2
Homologs : HomoloGeneTNFAIP2
Homology/Alignments : Family Browser (UCSC)TNFAIP2
Gene fusions - Rearrangements
Fusion : QuiverTNFAIP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFAIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFAIP2
dbVarTNFAIP2
ClinVarTNFAIP2
MonarchTNFAIP2
1000_GenomesTNFAIP2 
Exome Variant ServerTNFAIP2
GNOMAD BrowserENSG00000185215
Varsome BrowserTNFAIP2
ACMGTNFAIP2 variants
VarityQ03169
Genomic Variants (DGV)TNFAIP2 [DGVbeta]
DECIPHERTNFAIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFAIP2 
Mutations
ICGC Data PortalTNFAIP2 
TCGA Data PortalTNFAIP2 
Broad Tumor PortalTNFAIP2
OASIS PortalTNFAIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFAIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNFAIP2
Mutations and Diseases : HGMDTNFAIP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNFAIP2
DgiDB (Drug Gene Interaction Database)TNFAIP2
DoCM (Curated mutations)TNFAIP2
CIViC (Clinical Interpretations of Variants in Cancer)TNFAIP2
Cancer3DTNFAIP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603300   
Orphanet
DisGeNETTNFAIP2
MedgenTNFAIP2
Genetic Testing Registry TNFAIP2
NextProtQ03169 [Medical]
GENETestsTNFAIP2
Target ValidationTNFAIP2
Huge Navigator TNFAIP2 [HugePedia]
ClinGenTNFAIP2
Clinical trials, drugs, therapy
MyCancerGenomeTNFAIP2
Protein Interactions : CTDTNFAIP2
Pharm GKB GenePA36592
PharosQ03169
Clinical trialTNFAIP2
Miscellaneous
canSAR (ICR)TNFAIP2
HarmonizomeTNFAIP2
DataMed IndexTNFAIP2
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNFAIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:40 CEST 2021

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