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TNFAIP2 (TNF alpha induced protein 2)

Identity

Alias_namestumor necrosis factor
Alias_symbol (synonym)B94
EXOC3L3
Other alias
HGNC (Hugo) TNFAIP2
LocusID (NCBI) 7127
Atlas_Id 42599
Location 14q32.32  [Link to chromosome band 14q32]
Location_base_pair Starts at 103126327 and ends at 103137439 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TNFAIP2 (14q32.32) / CD2BP2 (16p11.2)TNFAIP2 (14q32.32) / KDM2B (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNFAIP2   11895
Cards
Entrez_Gene (NCBI)TNFAIP2  7127  TNF alpha induced protein 2
AliasesB94; EXOC3L3
GeneCards (Weizmann)TNFAIP2
Ensembl hg19 (Hinxton)ENSG00000185215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185215 [Gene_View]  chr14:103126327-103137439 [Contig_View]  TNFAIP2 [Vega]
ICGC DataPortalENSG00000185215
TCGA cBioPortalTNFAIP2
AceView (NCBI)TNFAIP2
Genatlas (Paris)TNFAIP2
WikiGenes7127
SOURCE (Princeton)TNFAIP2
Genetics Home Reference (NIH)TNFAIP2
Genomic and cartography
GoldenPath hg38 (UCSC)TNFAIP2  -     chr14:103126327-103137439 +  14q32.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFAIP2  -     14q32.32   [Description]    (hg19-Feb_2009)
EnsemblTNFAIP2 - 14q32.32 [CytoView hg19]  TNFAIP2 - 14q32.32 [CytoView hg38]
Mapping of homologs : NCBITNFAIP2 [Mapview hg19]  TNFAIP2 [Mapview hg38]
OMIM603300   
Gene and transcription
Genbank (Entrez)AK302929 AK303781 AK309854 AK316496 BC017818
RefSeq transcript (Entrez)NM_006291
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFAIP2
Cluster EST : UnigeneHs.736562 [ NCBI ]
CGAP (NCI)Hs.736562
Alternative Splicing GalleryENSG00000185215
Gene ExpressionTNFAIP2 [ NCBI-GEO ]   TNFAIP2 [ EBI - ARRAY_EXPRESS ]   TNFAIP2 [ SEEK ]   TNFAIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFAIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7127
GTEX Portal (Tissue expression)TNFAIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03169   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03169  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03169
Splice isoforms : SwissVarQ03169
PhosPhoSitePlusQ03169
Domains : Interpro (EBI)EXOC3/Sec6   
Domain families : Pfam (Sanger)Sec6 (PF06046)   
Domain families : Pfam (NCBI)pfam06046   
Conserved Domain (NCBI)TNFAIP2
DMDM Disease mutations7127
Blocks (Seattle)TNFAIP2
SuperfamilyQ03169
Human Protein AtlasENSG00000185215
Peptide AtlasQ03169
HPRD04487
IPIIPI00304866   IPI00910353   IPI01011864   
Protein Interaction databases
DIP (DOE-UCLA)Q03169
IntAct (EBI)Q03169
FunCoupENSG00000185215
BioGRIDTNFAIP2
STRING (EMBL)TNFAIP2
ZODIACTNFAIP2
Ontologies - Pathways
QuickGOQ03169
Ontology : AmiGOexocyst  SNARE binding  angiogenesis  extracellular space  exocytosis  cell differentiation  exocyst localization  
Ontology : EGO-EBIexocyst  SNARE binding  angiogenesis  extracellular space  exocytosis  cell differentiation  exocyst localization  
NDEx NetworkTNFAIP2
Atlas of Cancer Signalling NetworkTNFAIP2
Wikipedia pathwaysTNFAIP2
Orthology - Evolution
OrthoDB7127
GeneTree (enSembl)ENSG00000185215
Phylogenetic Trees/Animal Genes : TreeFamTNFAIP2
HOVERGENQ03169
HOGENOMQ03169
Homologs : HomoloGeneTNFAIP2
Homology/Alignments : Family Browser (UCSC)TNFAIP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFAIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFAIP2
dbVarTNFAIP2
ClinVarTNFAIP2
1000_GenomesTNFAIP2 
Exome Variant ServerTNFAIP2
ExAC (Exome Aggregation Consortium)TNFAIP2 (select the gene name)
Genetic variants : HAPMAP7127
Genomic Variants (DGV)TNFAIP2 [DGVbeta]
DECIPHERTNFAIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFAIP2 
Mutations
ICGC Data PortalTNFAIP2 
TCGA Data PortalTNFAIP2 
Broad Tumor PortalTNFAIP2
OASIS PortalTNFAIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFAIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNFAIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNFAIP2
DgiDB (Drug Gene Interaction Database)TNFAIP2
DoCM (Curated mutations)TNFAIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNFAIP2 (select a term)
intoGenTNFAIP2
Cancer3DTNFAIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603300   
Orphanet
MedgenTNFAIP2
Genetic Testing Registry TNFAIP2
NextProtQ03169 [Medical]
TSGene7127
GENETestsTNFAIP2
Target ValidationTNFAIP2
Huge Navigator TNFAIP2 [HugePedia]
snp3D : Map Gene to Disease7127
BioCentury BCIQTNFAIP2
ClinGenTNFAIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7127
Chemical/Pharm GKB GenePA36592
Clinical trialTNFAIP2
Miscellaneous
canSAR (ICR)TNFAIP2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFAIP2
EVEXTNFAIP2
GoPubMedTNFAIP2
iHOPTNFAIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:59:55 CEST 2017

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