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TNFAIP8L1 (TNF alpha induced protein 8 like 1)

Identity

Alias_namestumor necrosis factor
Alias_symbol (synonym)MGC17791
HGNC (Hugo) TNFAIP8L1
LocusID (NCBI) 126282
Atlas_Id 43042
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4640029 and ends at 4655580 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TNFAIP8L1 (19p13.3) / BAZ2B (2q24.2)TNFAIP8L1 (19p13.3) / SPEF2 (5p13.2)TNFAIP8L1 19p13.3 / SPEF2 5p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNFAIP8L1   28279
Cards
Entrez_Gene (NCBI)TNFAIP8L1  126282  TNF alpha induced protein 8 like 1
AliasesTIPE1
GeneCards (Weizmann)TNFAIP8L1
Ensembl hg19 (Hinxton)ENSG00000185361 [Gene_View]  chr19:4640029-4655580 [Contig_View]  TNFAIP8L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185361 [Gene_View]  chr19:4640029-4655580 [Contig_View]  TNFAIP8L1 [Vega]
ICGC DataPortalENSG00000185361
TCGA cBioPortalTNFAIP8L1
AceView (NCBI)TNFAIP8L1
Genatlas (Paris)TNFAIP8L1
WikiGenes126282
SOURCE (Princeton)TNFAIP8L1
Genetics Home Reference (NIH)TNFAIP8L1
Genomic and cartography
GoldenPath hg19 (UCSC)TNFAIP8L1  -     chr19:4640029-4655580 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TNFAIP8L1  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblTNFAIP8L1 - 19p13.3 [CytoView hg19]  TNFAIP8L1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBITNFAIP8L1 [Mapview hg19]  TNFAIP8L1 [Mapview hg38]
OMIM615869   
Gene and transcription
Genbank (Entrez)AK024161 AK097251 AK098427 BC017672 BC044250
RefSeq transcript (Entrez)NM_001167942 NM_152362
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)TNFAIP8L1
Cluster EST : UnigeneHs.465643 [ NCBI ]
CGAP (NCI)Hs.465643
Alternative Splicing GalleryENSG00000185361
Gene ExpressionTNFAIP8L1 [ NCBI-GEO ]   TNFAIP8L1 [ EBI - ARRAY_EXPRESS ]   TNFAIP8L1 [ SEEK ]   TNFAIP8L1 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFAIP8L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126282
GTEX Portal (Tissue expression)TNFAIP8L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVP5
Splice isoforms : SwissVarQ8WVP5
PhosPhoSitePlusQ8WVP5
Domains : Interpro (EBI)DUF758   
Domain families : Pfam (Sanger)DUF758 (PF05527)   
Domain families : Pfam (NCBI)pfam05527   
Conserved Domain (NCBI)TNFAIP8L1
DMDM Disease mutations126282
Blocks (Seattle)TNFAIP8L1
SuperfamilyQ8WVP5
Human Protein AtlasENSG00000185361
Peptide AtlasQ8WVP5
HPRD11314
IPIIPI00103171   IPI00981499   IPI00985352   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVP5
IntAct (EBI)Q8WVP5
FunCoupENSG00000185361
BioGRIDTNFAIP8L1
STRING (EMBL)TNFAIP8L1
ZODIACTNFAIP8L1
Ontologies - Pathways
QuickGOQ8WVP5
Ontology : AmiGOprotein binding  cytoplasm  cytoplasm  negative regulation of TOR signaling  negative regulation of TOR signaling  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoplasm  negative regulation of TOR signaling  negative regulation of TOR signaling  
NDEx NetworkTNFAIP8L1
Atlas of Cancer Signalling NetworkTNFAIP8L1
Wikipedia pathwaysTNFAIP8L1
Orthology - Evolution
OrthoDB126282
GeneTree (enSembl)ENSG00000185361
Phylogenetic Trees/Animal Genes : TreeFamTNFAIP8L1
HOVERGENQ8WVP5
HOGENOMQ8WVP5
Homologs : HomoloGeneTNFAIP8L1
Homology/Alignments : Family Browser (UCSC)TNFAIP8L1
Gene fusions - Rearrangements
Fusion : MitelmanTNFAIP8L1/SPEF2 [19p13.3/5p13.2]  
Fusion: TCGATNFAIP8L1 19p13.3 SPEF2 5p13.2 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFAIP8L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFAIP8L1
dbVarTNFAIP8L1
ClinVarTNFAIP8L1
1000_GenomesTNFAIP8L1 
Exome Variant ServerTNFAIP8L1
ExAC (Exome Aggregation Consortium)TNFAIP8L1 (select the gene name)
Genetic variants : HAPMAP126282
Genomic Variants (DGV)TNFAIP8L1 [DGVbeta]
DECIPHER (Syndromes)19:4640029-4655580  ENSG00000185361
CONAN: Copy Number AnalysisTNFAIP8L1 
Mutations
ICGC Data PortalTNFAIP8L1 
TCGA Data PortalTNFAIP8L1 
Broad Tumor PortalTNFAIP8L1
OASIS PortalTNFAIP8L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFAIP8L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNFAIP8L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNFAIP8L1
DgiDB (Drug Gene Interaction Database)TNFAIP8L1
DoCM (Curated mutations)TNFAIP8L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNFAIP8L1 (select a term)
intoGenTNFAIP8L1
Cancer3DTNFAIP8L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615869   
Orphanet
MedgenTNFAIP8L1
Genetic Testing Registry TNFAIP8L1
NextProtQ8WVP5 [Medical]
TSGene126282
GENETestsTNFAIP8L1
Huge Navigator TNFAIP8L1 [HugePedia]
snp3D : Map Gene to Disease126282
BioCentury BCIQTNFAIP8L1
ClinGenTNFAIP8L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126282
Chemical/Pharm GKB GenePA142670722
Clinical trialTNFAIP8L1
Miscellaneous
canSAR (ICR)TNFAIP8L1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFAIP8L1
EVEXTNFAIP8L1
GoPubMedTNFAIP8L1
iHOPTNFAIP8L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:54:07 CET 2016

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