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TNFAIP8L1 (tumor necrosis factor, alpha-induced protein 8-like 1)

Identity

Other namesTIPE1
HGNC (Hugo) TNFAIP8L1
LocusID (NCBI) 126282
Location 19p13.3
Location_base_pair Starts at 4640029 and ends at 4655580 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNFAIP8L1   28279
Cards
Entrez_Gene (NCBI)TNFAIP8L1  126282  tumor necrosis factor, alpha-induced protein 8-like 1
GeneCards (Weizmann)TNFAIP8L1
Ensembl (Hinxton)ENSG00000185361 [Gene_View]  chr19:4640029-4655580 [Contig_View]  TNFAIP8L1 [Vega]
ICGC DataPortalENSG00000185361
cBioPortalTNFAIP8L1
AceView (NCBI)TNFAIP8L1
Genatlas (Paris)TNFAIP8L1
WikiGenes126282
SOURCE (Princeton)NM_001167942 NM_152362
Genomic and cartography
GoldenPath (UCSC)TNFAIP8L1  -  19p13.3   chr19:4640029-4655580 +  19p13.3   [Description]    (hg19-Feb_2009)
EnsemblTNFAIP8L1 - 19p13.3 [CytoView]
Mapping of homologs : NCBITNFAIP8L1 [Mapview]
OMIM615869   
Gene and transcription
Genbank (Entrez)AK024161 AK097251 BC017672 BC044250 BX282702
RefSeq transcript (Entrez)NM_001167942 NM_152362
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838477 NW_004929412
Consensus coding sequences : CCDS (NCBI)TNFAIP8L1
Cluster EST : UnigeneHs.465643 [ NCBI ]
CGAP (NCI)Hs.465643
Alternative Splicing : Fast-db (Paris)GSHG0014485
Alternative Splicing GalleryENSG00000185361
Gene ExpressionTNFAIP8L1 [ NCBI-GEO ]     TNFAIP8L1 [ SEEK ]   TNFAIP8L1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVP5 (Uniprot)
NextProtQ8WVP5  [Medical]
With graphics : InterProQ8WVP5
Splice isoforms : SwissVarQ8WVP5 (Swissvar)
Domains : Interpro (EBI)DUF758 [organisation]  
Related proteins : CluSTrQ8WVP5
Domain families : Pfam (Sanger)DUF758 (PF05527)   
Domain families : Pfam (NCBI)pfam05527   
DMDM Disease mutations126282
Blocks (Seattle)Q8WVP5
Human Protein AtlasENSG00000185361 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8WVP5
HPRD11314
IPIIPI00103171   IPI00981499   IPI00985352   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVP5
IntAct (EBI)Q8WVP5
FunCoupENSG00000185361
BioGRIDTNFAIP8L1
InParanoidQ8WVP5
Interologous Interaction database Q8WVP5
IntegromeDBTNFAIP8L1
STRING (EMBL)TNFAIP8L1
Ontologies - Pathways
Ontology : AmiGO
Ontology : EGO-EBI
Protein Interaction DatabaseTNFAIP8L1
Wikipedia pathwaysTNFAIP8L1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TNFAIP8L1
snp3D : Map Gene to Disease126282
SNP (GeneSNP Utah)TNFAIP8L1
SNP : HGBaseTNFAIP8L1
Genetic variants : HAPMAPTNFAIP8L1
Exome VariantTNFAIP8L1
1000_GenomesTNFAIP8L1 
ICGC programENSG00000185361 
Somatic Mutations in Cancer : COSMICTNFAIP8L1 
CONAN: Copy Number AnalysisTNFAIP8L1 
Mutations and Diseases : HGMDTNFAIP8L1
Mutations and Diseases : intOGenTNFAIP8L1
Genomic VariantsTNFAIP8L1  TNFAIP8L1 [DGVbeta]
dbVarTNFAIP8L1
ClinVarTNFAIP8L1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM615869   
MedgenTNFAIP8L1
GENETestsTNFAIP8L1
Disease Genetic AssociationTNFAIP8L1
Huge Navigator TNFAIP8L1 [HugePedia]  TNFAIP8L1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTNFAIP8L1
Homology/Alignments : Family Browser (UCSC)TNFAIP8L1
Phylogenetic Trees/Animal Genes : TreeFamTNFAIP8L1
Chemical/Protein Interactions : CTD126282
Chemical/Pharm GKB GenePA142670722
Clinical trialTNFAIP8L1
Cancer Resource (Charite)ENSG00000185361
Other databases
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
CoreMineTNFAIP8L1
iHOPTNFAIP8L1
OncoSearchTNFAIP8L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:08:06 CEST 2014

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