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TNFAIP8L2-SCNM1 (TNFAIP8L2-SCNM1 readthrough)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100534012
Atlas_Id 75032
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151156629 and ends at 151170297 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)TNFAIP8L2-SCNM1  100534012  TNFAIP8L2-SCNM1 readthrough
Aliases
GeneCards (Weizmann)TNFAIP8L2-SCNM1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:151156629-151170297 [Contig_View]  TNFAIP8L2-SCNM1 [Vega]
TCGA cBioPortalTNFAIP8L2-SCNM1
AceView (NCBI)TNFAIP8L2-SCNM1
Genatlas (Paris)TNFAIP8L2-SCNM1
WikiGenes100534012
SOURCE (Princeton)TNFAIP8L2-SCNM1
Genetics Home Reference (NIH)TNFAIP8L2-SCNM1
Genomic and cartography
GoldenPath hg38 (UCSC)TNFAIP8L2-SCNM1  -     chr1:151156629-151170297 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFAIP8L2-SCNM1  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblTNFAIP8L2-SCNM1 - 1q21.3 [CytoView hg19]  TNFAIP8L2-SCNM1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBITNFAIP8L2-SCNM1 [Mapview hg19]  TNFAIP8L2-SCNM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG531092 CR999387
RefSeq transcript (Entrez)NM_001204848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFAIP8L2-SCNM1
Cluster EST : UnigeneHs.732060 [ NCBI ]
CGAP (NCI)Hs.732060
Gene ExpressionTNFAIP8L2-SCNM1 [ NCBI-GEO ]   TNFAIP8L2-SCNM1 [ EBI - ARRAY_EXPRESS ]   TNFAIP8L2-SCNM1 [ SEEK ]   TNFAIP8L2-SCNM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFAIP8L2-SCNM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100534012
GTEX Portal (Tissue expression)TNFAIP8L2-SCNM1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNFAIP8L2-SCNM1
DMDM Disease mutations100534012
Blocks (Seattle)TNFAIP8L2-SCNM1
IPIIPI00643651   
Protein Interaction databases
BioGRIDTNFAIP8L2-SCNM1
STRING (EMBL)TNFAIP8L2-SCNM1
ZODIACTNFAIP8L2-SCNM1
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100534012
BioCentury BCIQTNFAIP8L2-SCNM1
ClinGenTNFAIP8L2-SCNM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100534012
Clinical trialTNFAIP8L2-SCNM1
Miscellaneous
canSAR (ICR)TNFAIP8L2-SCNM1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFAIP8L2-SCNM1
EVEXTNFAIP8L2-SCNM1
GoPubMedTNFAIP8L2-SCNM1
iHOPTNFAIP8L2-SCNM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:33:29 CET 2017

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