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TNFRSF11A (TNF receptor superfamily member 11a)

Identity

Alias_namesPDB2
LOH18CR1
tumor necrosis factor receptor superfamily, member 11a, activator of NFKB
Paget disease of bone 2
loss of heterozygosity, 18, chromosomal region 1
tumor necrosis factor receptor superfamily, member 11a, NFKB activator
Alias_symbol (synonym)RANK
CD265
FEO
Other aliasODFR
OFE
OPTB7
OSTS
TRANCER
HGNC (Hugo) TNFRSF11A
LocusID (NCBI) 8792
Atlas_Id 53317
Location 18q21.33  [Link to chromosome band 18q21]
Location_base_pair Starts at 62325287 and ends at 62387710 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PAPPA (9q33.1) / TNFRSF11A (18q21.33)TNFRSF11A (18q21.33) / KIAA1468 (18q21.33)TNFRSF11A 18q21.33 / KIAA1468 18q21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t1818q21q21ID103067


External links

Nomenclature
HGNC (Hugo)TNFRSF11A   11908
LRG (Locus Reference Genomic)LRG_194
Cards
Entrez_Gene (NCBI)TNFRSF11A  8792  TNF receptor superfamily member 11a
AliasesCD265; FEO; LOH18CR1; ODFR; 
OFE; OPTB7; OSTS; PDB2; RANK; TRANCER
GeneCards (Weizmann)TNFRSF11A
Ensembl hg19 (Hinxton)ENSG00000141655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141655 [Gene_View]  ENSG00000141655 [Sequence]  chr18:62325287-62387710 [Contig_View]  TNFRSF11A [Vega]
ICGC DataPortalENSG00000141655
TCGA cBioPortalTNFRSF11A
AceView (NCBI)TNFRSF11A
Genatlas (Paris)TNFRSF11A
WikiGenes8792
SOURCE (Princeton)TNFRSF11A
Genetics Home Reference (NIH)TNFRSF11A
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF11A  -     chr18:62325287-62387710 +  18q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF11A  -     18q21.33   [Description]    (hg19-Feb_2009)
GoldenPathTNFRSF11A - 18q21.33 [CytoView hg19]  TNFRSF11A - 18q21.33 [CytoView hg38]
ImmunoBaseENSG00000141655
Mapping of homologs : NCBITNFRSF11A [Mapview hg19]  TNFRSF11A [Mapview hg38]
OMIM174810   602080   603499   612301   
Gene and transcription
Genbank (Entrez)AB209762 AF018253 AF086403 DA403964 HE647782
RefSeq transcript (Entrez)NM_001270949 NM_001270950 NM_001270951 NM_001278268 NM_003839
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFRSF11A
Alternative Splicing GalleryENSG00000141655
Gene ExpressionTNFRSF11A [ NCBI-GEO ]   TNFRSF11A [ EBI - ARRAY_EXPRESS ]   TNFRSF11A [ SEEK ]   TNFRSF11A [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF11A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)8792
GTEX Portal (Tissue expression)TNFRSF11A
Human Protein AtlasENSG00000141655-TNFRSF11A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNFRSF11A
DMDM Disease mutations8792
Blocks (Seattle)TNFRSF11A
Human Protein Atlas [tissue]ENSG00000141655-TNFRSF11A [tissue]
HPRD04609
IPIIPI00021968   IPI00555635   
Protein Interaction databases
FunCoupENSG00000141655
BioGRIDTNFRSF11A
STRING (EMBL)TNFRSF11A
ZODIACTNFRSF11A
Ontologies - Pathways
Huge Navigator TNFRSF11A [HugePedia]
snp3D : Map Gene to Disease8792
BioCentury BCIQTNFRSF11A
ClinGenTNFRSF11A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8792
Chemical/Pharm GKB GenePA36601
Clinical trialTNFRSF11A
Miscellaneous
canSAR (ICR)TNFRSF11A (select the gene name)
DataMed IndexTNFRSF11A
Probes
Litterature
PubMed243 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFRSF11A
EVEXTNFRSF11A
GoPubMedTNFRSF11A
iHOPTNFRSF11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:13:36 CET 2020

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