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TNFRSF13B (tumor necrosis factor receptor superfamily member 13B)

Identity

Other namesCD267
CVID
CVID2
IGAD2
RYZN
TACI
TNFRSF14B
HGNC (Hugo) TNFRSF13B
LocusID (NCBI) 23495
Atlas_Id 42613
Location 17p11.2
Location_base_pair Starts at 16842398 and ends at 16875402 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TNFRSF13B (17p11.2) / NBEAL2 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNFRSF13B   18153
Cards
Entrez_Gene (NCBI)TNFRSF13B  23495  tumor necrosis factor receptor superfamily member 13B
GeneCards (Weizmann)TNFRSF13B
Ensembl hg19 (Hinxton)ENSG00000240505 [Gene_View]  chr17:16842398-16875402 [Contig_View]  TNFRSF13B [Vega]
Ensembl hg38 (Hinxton)ENSG00000240505 [Gene_View]  chr17:16842398-16875402 [Contig_View]  TNFRSF13B [Vega]
ICGC DataPortalENSG00000240505
TCGA cBioPortalTNFRSF13B
AceView (NCBI)TNFRSF13B
Genatlas (Paris)TNFRSF13B
WikiGenes23495
SOURCE (Princeton)TNFRSF13B
Genomic and cartography
GoldenPath hg19 (UCSC)TNFRSF13B  -     chr17:16842398-16875402 -  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TNFRSF13B  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblTNFRSF13B - 17p11.2 [CytoView hg19]  TNFRSF13B - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBITNFRSF13B [Mapview hg19]  TNFRSF13B [Mapview hg38]
OMIM240500   604907   609529   
Gene and transcription
Genbank (Entrez)AF023614 AK097261 AK223453 AK301032 AK313302
RefSeq transcript (Entrez)NM_012452
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_007281 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)TNFRSF13B
Cluster EST : UnigeneHs.158341 [ NCBI ]
CGAP (NCI)Hs.158341
Alternative Splicing : Fast-db (Paris)GSHG0013143
Alternative Splicing GalleryENSG00000240505
Gene ExpressionTNFRSF13B [ NCBI-GEO ]   TNFRSF13B [ EBI - ARRAY_EXPRESS ]   TNFRSF13B [ SEEK ]   TNFRSF13B [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF13B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)23495
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14836 (Uniprot)
NextProtO14836  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14836
Splice isoforms : SwissVarO14836 (Swissvar)
PhosPhoSitePlusO14836
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)   
Domains : Interpro (EBI)TACI_Cys-rich-dom    TNFR_13B   
Domain families : Pfam (Sanger)TACI-CRD2 (PF09305)   
Domain families : Pfam (NCBI)pfam09305   
DMDM Disease mutations23495
Blocks (Seattle)TNFRSF13B
PDB (SRS)1XU1    1XUT   
PDB (PDBSum)1XU1    1XUT   
PDB (IMB)1XU1    1XUT   
PDB (RSDB)1XU1    1XUT   
Structural Biology KnowledgeBase1XU1    1XUT   
SCOP (Structural Classification of Proteins)1XU1    1XUT   
CATH (Classification of proteins structures)1XU1    1XUT   
SuperfamilyO14836
Human Protein AtlasENSG00000240505
Peptide AtlasO14836
HPRD05365
IPIIPI00018362   IPI00385403   IPI00909729   IPI00984243   
Protein Interaction databases
DIP (DOE-UCLA)O14836
IntAct (EBI)O14836
FunCoupENSG00000240505
BioGRIDTNFRSF13B
STRING (EMBL)TNFRSF13B
ZODIACTNFRSF13B
Ontologies - Pathways
QuickGOO14836
Ontology : AmiGOB cell homeostasis  hematopoietic progenitor cell differentiation  adaptive immune response  receptor activity  protein binding  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  external side of plasma membrane  negative regulation of B cell proliferation  tumor necrosis factor-mediated signaling pathway  
Ontology : EGO-EBIB cell homeostasis  hematopoietic progenitor cell differentiation  adaptive immune response  receptor activity  protein binding  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  external side of plasma membrane  negative regulation of B cell proliferation  tumor necrosis factor-mediated signaling pathway  
Pathways : KEGGCytokine-cytokine receptor interaction    Intestinal immune network for IgA production    Primary immunodeficiency   
NDEx Network
Atlas of Cancer Signalling NetworkTNFRSF13B
Wikipedia pathwaysTNFRSF13B
Orthology - Evolution
OrthoDB23495
GeneTree (enSembl)ENSG00000240505
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF13B
Homologs : HomoloGeneTNFRSF13B
Homology/Alignments : Family Browser (UCSC)TNFRSF13B
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTNFRSF13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFRSF13B
dbVarTNFRSF13B
ClinVarTNFRSF13B
1000_GenomesTNFRSF13B 
Exome Variant ServerTNFRSF13B
ExAC (Exome Aggregation Consortium)TNFRSF13B (select the gene name)
SNP (GeneSNP Utah)TNFRSF13B
SNP : HGBaseTNFRSF13B
Genetic variants : HAPMAPTNFRSF13B
Genomic Variants (DGV)TNFRSF13B [DGVbeta]
Mutations
ICGC Data PortalTNFRSF13B 
TCGA Data PortalTNFRSF13B 
Broad Tumor PortalTNFRSF13B
OASIS PortalTNFRSF13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFRSF13B 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch TNFRSF13B
DgiDB (Drug Gene Interaction Database)TNFRSF13B
DoCM (Curated mutations)TNFRSF13B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNFRSF13B (select a term)
intoGenTNFRSF13B
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:16842398-16875402
CONAN: Copy Number AnalysisTNFRSF13B 
Mutations and Diseases : HGMDTNFRSF13B
OMIM240500    604907    609529   
MedgenTNFRSF13B
Genetic Testing Registry TNFRSF13B
NextProtO14836 [Medical]
TSGene23495
GENETestsTNFRSF13B
Huge Navigator TNFRSF13B [HugePedia]  TNFRSF13B [HugeCancerGEM]
snp3D : Map Gene to Disease23495
BioCentury BCIQTNFRSF13B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23495
Chemical/Pharm GKB GenePA38509
Clinical trialTNFRSF13B
Miscellaneous
canSAR (ICR)TNFRSF13B (select the gene name)
Probes
Litterature
PubMed100 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFRSF13B
GoPubMedTNFRSF13B
iHOPTNFRSF13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 18:07:46 CEST 2016

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