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TNFRSF13B (TNF receptor superfamily member 13B)

Identity

Alias (NCBI)CD267
CVID
CVID2
IGAD2
RYZN
TACI
TNFRSF14B
HGNC (Hugo) TNFRSF13B
HGNC Alias symbTACI
CD267
IGAD2
HGNC Previous nametumor necrosis factor receptor superfamily, member 13B
LocusID (NCBI) 23495
Atlas_Id 42613
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 16939081 and ends at 16972118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TNFRSF13B (17p11.2) / NBEAL2 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TNFRSF13B   18153
LRG (Locus Reference Genomic)LRG_120
Cards
Entrez_Gene (NCBI)TNFRSF13B    TNF receptor superfamily member 13B
AliasesCD267; CVID; CVID2; IGAD2; 
RYZN; TACI; TNFRSF14B
GeneCards (Weizmann)TNFRSF13B
Ensembl hg19 (Hinxton)ENSG00000240505 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240505 [Gene_View]  ENSG00000240505 [Sequence]  chr17:16939081-16972118 [Contig_View]  TNFRSF13B [Vega]
ICGC DataPortalENSG00000240505
TCGA cBioPortalTNFRSF13B
AceView (NCBI)TNFRSF13B
Genatlas (Paris)TNFRSF13B
SOURCE (Princeton)TNFRSF13B
Genetics Home Reference (NIH)TNFRSF13B
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF13B  -     chr17:16939081-16972118 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF13B  -     17p11.2   [Description]    (hg19-Feb_2009)
GoldenPathTNFRSF13B - 17p11.2 [CytoView hg19]  TNFRSF13B - 17p11.2 [CytoView hg38]
ImmunoBaseENSG00000240505
Genome Data Viewer NCBITNFRSF13B [Mapview hg19]  
OMIM240500   604907   609529   
Gene and transcription
Genbank (Entrez)AF023614 AK097261 AK223453 AK301032 AK313302
RefSeq transcript (Entrez)NM_012452
Consensus coding sequences : CCDS (NCBI)TNFRSF13B
Gene ExpressionTNFRSF13B [ NCBI-GEO ]   TNFRSF13B [ EBI - ARRAY_EXPRESS ]   TNFRSF13B [ SEEK ]   TNFRSF13B [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF13B [ Firebrowse - Broad ]
GenevisibleExpression of TNFRSF13B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23495
GTEX Portal (Tissue expression)TNFRSF13B
Human Protein AtlasENSG00000240505-TNFRSF13B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14836   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14836  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14836
PhosPhoSitePlusO14836
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)   
Domains : Interpro (EBI)TACI_Cys-rich-dom    TNFR_13B   
Domain families : Pfam (Sanger)TACI-CRD2 (PF09305)   
Domain families : Pfam (NCBI)pfam09305   
Conserved Domain (NCBI)TNFRSF13B
PDB (RSDB)1XU1    1XUT   
PDB Europe1XU1    1XUT   
PDB (PDBSum)1XU1    1XUT   
PDB (IMB)1XU1    1XUT   
Structural Biology KnowledgeBase1XU1    1XUT   
SCOP (Structural Classification of Proteins)1XU1    1XUT   
CATH (Classification of proteins structures)1XU1    1XUT   
SuperfamilyO14836
AlphaFold pdb e-kbO14836   
Human Protein Atlas [tissue]ENSG00000240505-TNFRSF13B [tissue]
HPRD05365
Protein Interaction databases
DIP (DOE-UCLA)O14836
IntAct (EBI)O14836
BioGRIDTNFRSF13B
STRING (EMBL)TNFRSF13B
ZODIACTNFRSF13B
Ontologies - Pathways
QuickGOO14836
Ontology : AmiGOB cell homeostasis  hematopoietic progenitor cell differentiation  adaptive immune response  protein binding  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  negative regulation of B cell proliferation  tumor necrosis factor-mediated signaling pathway  signaling receptor activity  
Ontology : EGO-EBIB cell homeostasis  hematopoietic progenitor cell differentiation  adaptive immune response  protein binding  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  negative regulation of B cell proliferation  tumor necrosis factor-mediated signaling pathway  signaling receptor activity  
Pathways : KEGGCytokine-cytokine receptor interaction    Intestinal immune network for IgA production    Primary immunodeficiency   
NDEx NetworkTNFRSF13B
Atlas of Cancer Signalling NetworkTNFRSF13B
Wikipedia pathwaysTNFRSF13B
Orthology - Evolution
OrthoDB23495
GeneTree (enSembl)ENSG00000240505
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF13B
Homologs : HomoloGeneTNFRSF13B
Homology/Alignments : Family Browser (UCSC)TNFRSF13B
Gene fusions - Rearrangements
Fusion : QuiverTNFRSF13B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFRSF13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFRSF13B
dbVarTNFRSF13B
ClinVarTNFRSF13B
MonarchTNFRSF13B
1000_GenomesTNFRSF13B 
Exome Variant ServerTNFRSF13B
GNOMAD BrowserENSG00000240505
Varsome BrowserTNFRSF13B
ACMGTNFRSF13B variants
VarityO14836
Genomic Variants (DGV)TNFRSF13B [DGVbeta]
DECIPHERTNFRSF13B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFRSF13B 
Mutations
ICGC Data PortalTNFRSF13B 
TCGA Data PortalTNFRSF13B 
Broad Tumor PortalTNFRSF13B
OASIS PortalTNFRSF13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFRSF13B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNFRSF13B
Mutations and Diseases : HGMDTNFRSF13B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNFRSF13B
DgiDB (Drug Gene Interaction Database)TNFRSF13B
DoCM (Curated mutations)TNFRSF13B
CIViC (Clinical Interpretations of Variants in Cancer)TNFRSF13B
Cancer3DTNFRSF13B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM240500    604907    609529   
Orphanet3469   
DisGeNETTNFRSF13B
MedgenTNFRSF13B
Genetic Testing Registry TNFRSF13B
NextProtO14836 [Medical]
GENETestsTNFRSF13B
Target ValidationTNFRSF13B
Huge Navigator TNFRSF13B [HugePedia]
ClinGenTNFRSF13B
Clinical trials, drugs, therapy
MyCancerGenomeTNFRSF13B
Protein Interactions : CTDTNFRSF13B
Pharm GKB GenePA38509
PharosO14836
Clinical trialTNFRSF13B
Miscellaneous
canSAR (ICR)TNFRSF13B
HarmonizomeTNFRSF13B
DataMed IndexTNFRSF13B
Probes
Litterature
PubMed121 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNFRSF13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:42 CEST 2021

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