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TNFRSF13B (tumor necrosis factor receptor superfamily, member 13B)

Identity

Other namesCD267
CVID
CVID2
RYZN
TACI
TNFRSF14B
HGNC (Hugo) TNFRSF13B
LocusID (NCBI) 23495
Location 17p11.2
Location_base_pair Starts at 16842398 and ends at 16875402 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNFRSF13B   18153
Cards
Entrez_Gene (NCBI)TNFRSF13B  23495  tumor necrosis factor receptor superfamily, member 13B
GeneCards (Weizmann)TNFRSF13B
Ensembl (Hinxton)ENSG00000240505 [Gene_View]  chr17:16842398-16875402 [Contig_View]  TNFRSF13B [Vega]
ICGC DataPortalENSG00000240505
cBioPortalTNFRSF13B
AceView (NCBI)TNFRSF13B
Genatlas (Paris)TNFRSF13B
WikiGenes23495
SOURCE (Princeton)NM_012452
Genomic and cartography
GoldenPath (UCSC)TNFRSF13B  -  17p11.2   chr17:16842398-16875402 -  17p11.2   [Description]    (hg19-Feb_2009)
EnsemblTNFRSF13B - 17p11.2 [CytoView]
Mapping of homologs : NCBITNFRSF13B [Mapview]
OMIM240500   604907   609529   
Gene and transcription
Genbank (Entrez)AF023614 AK097261 AK223453 AK301032 AK313302
RefSeq transcript (Entrez)NM_012452
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_007281 NT_010718 NW_001838410 NW_004929405
Consensus coding sequences : CCDS (NCBI)TNFRSF13B
Cluster EST : UnigeneHs.158341 [ NCBI ]
CGAP (NCI)Hs.158341
Alternative Splicing : Fast-db (Paris)GSHG0013143
Alternative Splicing GalleryENSG00000240505
Gene ExpressionTNFRSF13B [ NCBI-GEO ]     TNFRSF13B [ SEEK ]   TNFRSF13B [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14836 (Uniprot)
NextProtO14836  [Medical]
With graphics : InterProO14836
Splice isoforms : SwissVarO14836 (Swissvar)
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domains : Interpro (EBI)TACI_Cys-rich-dom [organisation]   TNFR_13B [organisation]  
Related proteins : CluSTrO14836
Domain families : Pfam (Sanger)TACI-CRD2 (PF09305)   
Domain families : Pfam (NCBI)pfam09305   
DMDM Disease mutations23495
Blocks (Seattle)O14836
PDB (SRS)1XU1    1XUT   
PDB (PDBSum)1XU1    1XUT   
PDB (IMB)1XU1    1XUT   
PDB (RSDB)1XU1    1XUT   
Human Protein AtlasENSG00000240505 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO14836
HPRD05365
IPIIPI00018362   IPI00385403   IPI00909729   IPI00984243   
Protein Interaction databases
DIP (DOE-UCLA)O14836
IntAct (EBI)O14836
FunCoupENSG00000240505
BioGRIDTNFRSF13B
InParanoidO14836
Interologous Interaction database O14836
IntegromeDBTNFRSF13B
STRING (EMBL)TNFRSF13B
Ontologies - Pathways
Ontology : AmiGOB cell homeostasis  receptor activity  protein binding  integral to plasma membrane  cell surface receptor signaling pathway  external side of plasma membrane  negative regulation of B cell proliferation  
Ontology : EGO-EBIB cell homeostasis  receptor activity  protein binding  integral to plasma membrane  cell surface receptor signaling pathway  external side of plasma membrane  negative regulation of B cell proliferation  
Pathways : KEGGCytokine-cytokine receptor interaction    Intestinal immune network for IgA production    Primary immunodeficiency   
Protein Interaction DatabaseTNFRSF13B
Wikipedia pathwaysTNFRSF13B
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TNFRSF13B
snp3D : Map Gene to Disease23495
SNP (GeneSNP Utah)TNFRSF13B
SNP : HGBaseTNFRSF13B
Genetic variants : HAPMAPTNFRSF13B
Exome VariantTNFRSF13B
1000_GenomesTNFRSF13B 
ICGC programENSG00000240505 
Somatic Mutations in Cancer : COSMICTNFRSF13B 
CONAN: Copy Number AnalysisTNFRSF13B 
Mutations and Diseases : HGMDTNFRSF13B
Genomic VariantsTNFRSF13B  TNFRSF13B [DGVbeta]
dbVarTNFRSF13B
ClinVarTNFRSF13B
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM240500    604907    609529   
MedgenTNFRSF13B
GENETestsTNFRSF13B
Disease Genetic AssociationTNFRSF13B
Huge Navigator TNFRSF13B [HugePedia]  TNFRSF13B [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTNFRSF13B
Homology/Alignments : Family Browser (UCSC)TNFRSF13B
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF13B
Chemical/Protein Interactions : CTD23495
Chemical/Pharm GKB GenePA38509
Clinical trialTNFRSF13B
Cancer Resource (Charite)ENSG00000240505
Other databases
Probes
Litterature
PubMed83 Pubmed reference(s) in Entrez
CoreMineTNFRSF13B
iHOPTNFRSF13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:23:17 CEST 2014

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