Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TNFRSF13C (TNF receptor superfamily member 13C)

Identity

Alias (NCBI)BAFF-R
BAFFR
BROMIX
CD268
CVID4
prolixin
HGNC (Hugo) TNFRSF13C
HGNC Alias symbBAFFR
CD268
HGNC Previous nametumor necrosis factor receptor superfamily, member 13C
LocusID (NCBI) 115650
Atlas_Id 42614
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41925032 and ends at 41926817 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TNFRSF13C   17755
LRG (Locus Reference Genomic)LRG_184
Cards
Entrez_Gene (NCBI)TNFRSF13C    TNF receptor superfamily member 13C
AliasesBAFF-R; BAFFR; BROMIX; CD268; 
CVID4; prolixin
GeneCards (Weizmann)TNFRSF13C
Ensembl hg19 (Hinxton)ENSG00000159958 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159958 [Gene_View]  ENSG00000159958 [Sequence]  chr22:41925032-41926817 [Contig_View]  TNFRSF13C [Vega]
ICGC DataPortalENSG00000159958
TCGA cBioPortalTNFRSF13C
AceView (NCBI)TNFRSF13C
Genatlas (Paris)TNFRSF13C
SOURCE (Princeton)TNFRSF13C
Genetics Home Reference (NIH)TNFRSF13C
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF13C  -     chr22:41925032-41926817 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF13C  -     22q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTNFRSF13C - 22q13.2 [CytoView hg19]  TNFRSF13C - 22q13.2 [CytoView hg38]
ImmunoBaseENSG00000159958
Genome Data Viewer NCBITNFRSF13C [Mapview hg19]  
OMIM240500   606269   613494   
Gene and transcription
Genbank (Entrez)AF373846 AX772914 AX800072 BC105123 BC112030
RefSeq transcript (Entrez)NM_052945
Consensus coding sequences : CCDS (NCBI)TNFRSF13C
Gene ExpressionTNFRSF13C [ NCBI-GEO ]   TNFRSF13C [ EBI - ARRAY_EXPRESS ]   TNFRSF13C [ SEEK ]   TNFRSF13C [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF13C [ Firebrowse - Broad ]
GenevisibleExpression of TNFRSF13C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115650
GTEX Portal (Tissue expression)TNFRSF13C
Human Protein AtlasENSG00000159958-TNFRSF13C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RJ3
PhosPhoSitePlusQ96RJ3
Domains : Interpro (EBI)TNFR_13C    TNFR_13C/17    TNFR_13C_TALL-1-bd   
Domain families : Pfam (Sanger)BaffR-Tall_bind (PF09256)   
Domain families : Pfam (NCBI)pfam09256   
Conserved Domain (NCBI)TNFRSF13C
PDB (RSDB)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
PDB Europe1MPV    1OQE    1OSX    2HFG    3V56    4V46   
PDB (PDBSum)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
PDB (IMB)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
Structural Biology KnowledgeBase1MPV    1OQE    1OSX    2HFG    3V56    4V46   
SCOP (Structural Classification of Proteins)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
CATH (Classification of proteins structures)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
SuperfamilyQ96RJ3
AlphaFold pdb e-kbQ96RJ3   
Human Protein Atlas [tissue]ENSG00000159958-TNFRSF13C [tissue]
HPRD05883
Protein Interaction databases
DIP (DOE-UCLA)Q96RJ3
IntAct (EBI)Q96RJ3
BioGRIDTNFRSF13C
STRING (EMBL)TNFRSF13C
ZODIACTNFRSF13C
Ontologies - Pathways
QuickGOQ96RJ3
Ontology : AmiGOadaptive immune response  plasma membrane  external side of plasma membrane  integral component of membrane  positive regulation of B cell proliferation  T cell costimulation  B cell costimulation  tumor necrosis factor-mediated signaling pathway  signaling receptor activity  positive regulation of T cell proliferation  
Ontology : EGO-EBIadaptive immune response  plasma membrane  external side of plasma membrane  integral component of membrane  positive regulation of B cell proliferation  T cell costimulation  B cell costimulation  tumor necrosis factor-mediated signaling pathway  signaling receptor activity  positive regulation of T cell proliferation  
Pathways : BIOCARTATACI and BCMA stimulation of B cell immune responses. [Genes]   
Pathways : KEGGCytokine-cytokine receptor interaction    NF-kappa B signaling pathway    Intestinal immune network for IgA production    HTLV-I infection    Primary immunodeficiency   
NDEx NetworkTNFRSF13C
Atlas of Cancer Signalling NetworkTNFRSF13C
Wikipedia pathwaysTNFRSF13C
Orthology - Evolution
OrthoDB115650
GeneTree (enSembl)ENSG00000159958
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF13C
Homologs : HomoloGeneTNFRSF13C
Homology/Alignments : Family Browser (UCSC)TNFRSF13C
Gene fusions - Rearrangements
Fusion : QuiverTNFRSF13C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFRSF13C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFRSF13C
dbVarTNFRSF13C
ClinVarTNFRSF13C
MonarchTNFRSF13C
1000_GenomesTNFRSF13C 
Exome Variant ServerTNFRSF13C
GNOMAD BrowserENSG00000159958
Varsome BrowserTNFRSF13C
ACMGTNFRSF13C variants
VarityQ96RJ3
Genomic Variants (DGV)TNFRSF13C [DGVbeta]
DECIPHERTNFRSF13C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFRSF13C 
Mutations
ICGC Data PortalTNFRSF13C 
TCGA Data PortalTNFRSF13C 
Broad Tumor PortalTNFRSF13C
OASIS PortalTNFRSF13C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFRSF13C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNFRSF13C
Mutations and Diseases : HGMDTNFRSF13C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNFRSF13C
DgiDB (Drug Gene Interaction Database)TNFRSF13C
DoCM (Curated mutations)TNFRSF13C
CIViC (Clinical Interpretations of Variants in Cancer)TNFRSF13C
Cancer3DTNFRSF13C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM240500    606269    613494   
Orphanet3469   
DisGeNETTNFRSF13C
MedgenTNFRSF13C
Genetic Testing Registry TNFRSF13C
NextProtQ96RJ3 [Medical]
GENETestsTNFRSF13C
Target ValidationTNFRSF13C
Huge Navigator TNFRSF13C [HugePedia]
ClinGenTNFRSF13C
Clinical trials, drugs, therapy
MyCancerGenomeTNFRSF13C
Protein Interactions : CTDTNFRSF13C
Pharm GKB GenePA38466
PharosQ96RJ3
Clinical trialTNFRSF13C
Miscellaneous
canSAR (ICR)TNFRSF13C
HarmonizomeTNFRSF13C
DataMed IndexTNFRSF13C
Probes
Litterature
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNFRSF13C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:42 CEST 2021

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