Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TNFRSF13C (TNF receptor superfamily member 13C)

Identity

Alias_namestumor necrosis factor receptor superfamily
Alias_symbol (synonym)BAFFR
CD268
Other aliasBAFF-R
BROMIX
CVID4
prolixin
HGNC (Hugo) TNFRSF13C
LocusID (NCBI) 115650
Atlas_Id 42614
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41925032 and ends at 41926817 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNFRSF13C   17755
LRG (Locus Reference Genomic)LRG_184
Cards
Entrez_Gene (NCBI)TNFRSF13C  115650  TNF receptor superfamily member 13C
AliasesBAFF-R; BAFFR; BROMIX; CD268; 
CVID4; prolixin
GeneCards (Weizmann)TNFRSF13C
Ensembl hg19 (Hinxton)ENSG00000159958 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159958 [Gene_View]  chr22:41925032-41926817 [Contig_View]  TNFRSF13C [Vega]
ICGC DataPortalENSG00000159958
TCGA cBioPortalTNFRSF13C
AceView (NCBI)TNFRSF13C
Genatlas (Paris)TNFRSF13C
WikiGenes115650
SOURCE (Princeton)TNFRSF13C
Genetics Home Reference (NIH)TNFRSF13C
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF13C  -     chr22:41925032-41926817 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF13C  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblTNFRSF13C - 22q13.2 [CytoView hg19]  TNFRSF13C - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBITNFRSF13C [Mapview hg19]  TNFRSF13C [Mapview hg38]
OMIM240500   606269   613494   
Gene and transcription
Genbank (Entrez)AF373846 AX772914 AX800072 BC105123 BC111585
RefSeq transcript (Entrez)NM_052945
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFRSF13C
Cluster EST : UnigeneHs.344088 [ NCBI ]
CGAP (NCI)Hs.344088
Alternative Splicing GalleryENSG00000159958
Gene ExpressionTNFRSF13C [ NCBI-GEO ]   TNFRSF13C [ EBI - ARRAY_EXPRESS ]   TNFRSF13C [ SEEK ]   TNFRSF13C [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF13C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115650
GTEX Portal (Tissue expression)TNFRSF13C
Human Protein AtlasENSG00000159958-TNFRSF13C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RJ3
Splice isoforms : SwissVarQ96RJ3
PhosPhoSitePlusQ96RJ3
Domains : Interpro (EBI)TNFR_13C    TNFR_13C_TALL-1-bd   
Domain families : Pfam (Sanger)BaffR-Tall_bind (PF09256)   
Domain families : Pfam (NCBI)pfam09256   
Conserved Domain (NCBI)TNFRSF13C
DMDM Disease mutations115650
Blocks (Seattle)TNFRSF13C
PDB (SRS)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
PDB (PDBSum)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
PDB (IMB)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
PDB (RSDB)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
Structural Biology KnowledgeBase1MPV    1OQE    1OSX    2HFG    3V56    4V46   
SCOP (Structural Classification of Proteins)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
CATH (Classification of proteins structures)1MPV    1OQE    1OSX    2HFG    3V56    4V46   
SuperfamilyQ96RJ3
Human Protein Atlas [tissue]ENSG00000159958-TNFRSF13C [tissue]
Peptide AtlasQ96RJ3
HPRD05883
IPIIPI00045337   IPI00218927   
Protein Interaction databases
DIP (DOE-UCLA)Q96RJ3
IntAct (EBI)Q96RJ3
FunCoupENSG00000159958
BioGRIDTNFRSF13C
STRING (EMBL)TNFRSF13C
ZODIACTNFRSF13C
Ontologies - Pathways
QuickGOQ96RJ3
Ontology : AmiGOB cell homeostasis  adaptive immune response  positive regulation of germinal center formation  plasma membrane  external side of plasma membrane  integral component of membrane  positive regulation of B cell proliferation  T cell costimulation  B cell costimulation  tumor necrosis factor-mediated signaling pathway  positive regulation of T cell proliferation  positive regulation of interferon-gamma biosynthetic process  
Ontology : EGO-EBIB cell homeostasis  adaptive immune response  positive regulation of germinal center formation  plasma membrane  external side of plasma membrane  integral component of membrane  positive regulation of B cell proliferation  T cell costimulation  B cell costimulation  tumor necrosis factor-mediated signaling pathway  positive regulation of T cell proliferation  positive regulation of interferon-gamma biosynthetic process  
Pathways : BIOCARTATACI and BCMA stimulation of B cell immune responses. [Genes]   
Pathways : KEGGCytokine-cytokine receptor interaction    NF-kappa B signaling pathway    Intestinal immune network for IgA production    HTLV-I infection    Primary immunodeficiency   
NDEx NetworkTNFRSF13C
Atlas of Cancer Signalling NetworkTNFRSF13C
Wikipedia pathwaysTNFRSF13C
Orthology - Evolution
OrthoDB115650
GeneTree (enSembl)ENSG00000159958
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF13C
HOVERGENQ96RJ3
HOGENOMQ96RJ3
Homologs : HomoloGeneTNFRSF13C
Homology/Alignments : Family Browser (UCSC)TNFRSF13C
Gene fusions - Rearrangements
Tumor Fusion PortalTNFRSF13C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFRSF13C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFRSF13C
dbVarTNFRSF13C
ClinVarTNFRSF13C
1000_GenomesTNFRSF13C 
Exome Variant ServerTNFRSF13C
ExAC (Exome Aggregation Consortium)ENSG00000159958
GNOMAD BrowserENSG00000159958
Genetic variants : HAPMAP115650
Genomic Variants (DGV)TNFRSF13C [DGVbeta]
DECIPHERTNFRSF13C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFRSF13C 
Mutations
ICGC Data PortalTNFRSF13C 
TCGA Data PortalTNFRSF13C 
Broad Tumor PortalTNFRSF13C
OASIS PortalTNFRSF13C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFRSF13C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNFRSF13C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch TNFRSF13C
DgiDB (Drug Gene Interaction Database)TNFRSF13C
DoCM (Curated mutations)TNFRSF13C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNFRSF13C (select a term)
intoGenTNFRSF13C
Cancer3DTNFRSF13C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM240500    606269    613494   
Orphanet3469   
DisGeNETTNFRSF13C
MedgenTNFRSF13C
Genetic Testing Registry TNFRSF13C
NextProtQ96RJ3 [Medical]
TSGene115650
GENETestsTNFRSF13C
Target ValidationTNFRSF13C
Huge Navigator TNFRSF13C [HugePedia]
snp3D : Map Gene to Disease115650
BioCentury BCIQTNFRSF13C
ClinGenTNFRSF13C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115650
Chemical/Pharm GKB GenePA38466
Clinical trialTNFRSF13C
Miscellaneous
canSAR (ICR)TNFRSF13C (select the gene name)
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFRSF13C
EVEXTNFRSF13C
GoPubMedTNFRSF13C
iHOPTNFRSF13C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:39:03 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.