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TNFRSF19 (tumor necrosis factor receptor superfamily, member 19)

Identity

Other namesTAJ
TAJ-alpha
TRADE
TROY
HGNC (Hugo) TNFRSF19
LocusID (NCBI) 55504
Location 13q12.12
Location_base_pair Starts at 24153499 and ends at 24250244 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNFRSF19   11915
Entrez_Gene (NCBI)TNFRSF19  55504  tumor necrosis factor receptor superfamily, member 19
Cards
GeneCards (Weizmann)TNFRSF19
Ensembl (Hinxton)ENSG00000127863 [Gene_View]  chr13:24153499-24250244 [Contig_View]  TNFRSF19 [Vega]
AceView (NCBI)TNFRSF19
Genatlas (Paris)TNFRSF19
SOURCE (Stanford)NM_001204458 NM_001204459 NM_018647 NM_148957
Genomic and cartography
GoldenPath (UCSC)TNFRSF19  -  13q12.12   chr13:24153499-24250244 +  13q12.12   [Description]    (hg19-Feb_2009)
EnsemblTNFRSF19 - 13q12.12 [CytoView]
Mapping of homologs : NCBITNFRSF19 [Mapview]
OMIM606122   
Gene and transcription
Genbank (Entrez)AB040434 AF086276 AF167555 AF246998 AF246999
RefSeq transcript (SRS)NM_001204458 NM_001204459 NM_018647 NM_148957
RefSeq transcript (Entrez)NM_001204458 NM_001204459 NM_018647 NM_148957
RefSeq genomic (SRS)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838070 NW_004078077
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838070 NW_004078077
Consensus coding sequences : CCDS (NCBI)TNFRSF19
Cluster EST : UnigeneHs.730848 [ SRS ] Hs.730848 [ NCBI ]
CGAP (NCI)Hs.730848
Alternative Splicing : Fast-db (Paris)GSHG0007985
Alternative Splicing GalleryENSG00000127863
Gene ExpressionTNFRSF19 [ NCBI-GEO ]   TNFRSF19 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS68 (SRS) Q9NS68 (Uniprot)
NextProtQ9NS68
With graphics : InterProQ9NS68
Splice isoforms : SwissVarQ9NS68(Swissvar)
Domaine pattern : Prosite (SRS)TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domains : Interpro (SRS)TNFR/NGFR_Cys_rich_reg    TNFR_19   
Domains : Interpro (EBI)TNFR/NGFR_Cys_rich_reg    TNFR_19   
Related proteins : CluSTrQ9NS68
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TNFR (SM00208)  
DMDM55504
Blocks (Seattle)Q9NS68
Human Protein AtlasENSG00000127863
HPRD05838
IPIIPI00100067   IPI00219480   IPI01008771   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS68
IntAct (EBI)Q9NS68
FunCoupENSG00000127863
REACTOMETNFRSF19
Protein Interaction Database55504
BioGRIDTNFRSF19
InParanoidQ9NS68
Interologous Interaction database Q9NS68
IntegromeDBTNFRSF19
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TNFRSF19
SNP (GeneSNP Utah)TNFRSF19
SNP : HGBaseTNFRSF19
Genetic variants : HAPMAPTNFRSF19
Somatic Mutations in Cancer : COSMICTNFRSF19 
CONAN: Copy Number AnalysisTNFRSF19 
Mutations and Diseases : HGMDTNFRSF19
OMIM606122   
GENETests606122   
Disease Genetic AssociationTNFRSF19
Huge Navigator TNFRSF19 [HugePedia]  TNFRSF19 [HugeCancerGEM]
Genomic VariantsTNFRSF19  TNFRSF19 [DGVbeta]
snp3D : Map Gene to Disease55504
General knowledge
Homologs : HomoloGeneTNFRSF19
Homology/Alignments : Family Browser (UCSC)TNFRSF19
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF19
Chemical/Protein Interactions : CTD55504
Chemical/Pharm GKB GenePA36608
Clinical trialTNFRSF19
Cancer Resource (Charite)ENSG00000127863
Ontology : AmiGOhair follicle development  tumor necrosis factor-activated receptor activity  apoptotic process  induction of apoptosis  JNK cascade  integral to membrane  tumor necrosis factor-mediated signaling pathway  positive regulation of I-kappaB kinase/NF-kappaB cascade  
Ontology : EGO-EBIhair follicle development  tumor necrosis factor-activated receptor activity  apoptotic process  induction of apoptosis  JNK cascade  integral to membrane  tumor necrosis factor-mediated signaling pathway  positive regulation of I-kappaB kinase/NF-kappaB cascade  
Pathways : KEGGCytokine-cytokine receptor interaction
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
PubGeneTNFRSF19
iHOPTNFRSF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:48:12 CEST 2013
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