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TNFRSF19 (TNF receptor superfamily member 19)

Identity

Alias_namestumor necrosis factor receptor superfamily
Alias_symbol (synonym)TAJ-alpha
TROY
TAJ
TRADE
Other alias
HGNC (Hugo) TNFRSF19
LocusID (NCBI) 55504
Atlas_Id 42618
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 23579360 and ends at 23676105 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNFRSF19   11915
Cards
Entrez_Gene (NCBI)TNFRSF19  55504  TNF receptor superfamily member 19
AliasesTAJ; TAJ-alpha; TRADE; TROY
GeneCards (Weizmann)TNFRSF19
Ensembl hg19 (Hinxton)ENSG00000127863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127863 [Gene_View]  chr13:23579360-23676105 [Contig_View]  TNFRSF19 [Vega]
ICGC DataPortalENSG00000127863
TCGA cBioPortalTNFRSF19
AceView (NCBI)TNFRSF19
Genatlas (Paris)TNFRSF19
WikiGenes55504
SOURCE (Princeton)TNFRSF19
Genetics Home Reference (NIH)TNFRSF19
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF19  -     chr13:23579360-23676105 +  13q12.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF19  -     13q12.12   [Description]    (hg19-Feb_2009)
EnsemblTNFRSF19 - 13q12.12 [CytoView hg19]  TNFRSF19 - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBITNFRSF19 [Mapview hg19]  TNFRSF19 [Mapview hg38]
OMIM606122   
Gene and transcription
Genbank (Entrez)AB040434 AF086276 AF167555 AF246998 AF246999
RefSeq transcript (Entrez)NM_001204458 NM_001204459 NM_018647 NM_148957
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFRSF19
Cluster EST : UnigeneHs.730848 [ NCBI ]
CGAP (NCI)Hs.730848
Alternative Splicing GalleryENSG00000127863
Gene ExpressionTNFRSF19 [ NCBI-GEO ]   TNFRSF19 [ EBI - ARRAY_EXPRESS ]   TNFRSF19 [ SEEK ]   TNFRSF19 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55504
GTEX Portal (Tissue expression)TNFRSF19
Human Protein AtlasENSG00000127863-TNFRSF19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS68
Splice isoforms : SwissVarQ9NS68
PhosPhoSitePlusQ9NS68
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domains : Interpro (EBI)TNFR/NGFR_Cys_rich_reg    TNFR_19    TNFRSF19_N   
Domain families : Pfam (Sanger)TNFR_c6 (PF00020)   
Domain families : Pfam (NCBI)pfam00020   
Domain families : Smart (EMBL)TNFR (SM00208)  
Conserved Domain (NCBI)TNFRSF19
DMDM Disease mutations55504
Blocks (Seattle)TNFRSF19
SuperfamilyQ9NS68
Human Protein Atlas [tissue]ENSG00000127863-TNFRSF19 [tissue]
Peptide AtlasQ9NS68
HPRD05838
IPIIPI00100067   IPI00219480   IPI01008771   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS68
IntAct (EBI)Q9NS68
FunCoupENSG00000127863
BioGRIDTNFRSF19
STRING (EMBL)TNFRSF19
ZODIACTNFRSF19
Ontologies - Pathways
QuickGOQ9NS68
Ontology : AmiGOhair follicle development  receptor activity  tumor necrosis factor-activated receptor activity  intracellular  plasma membrane  apoptotic process  JNK cascade  tissue development  integral component of membrane  tumor necrosis factor-mediated signaling pathway  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of JNK cascade  
Ontology : EGO-EBIhair follicle development  receptor activity  tumor necrosis factor-activated receptor activity  intracellular  plasma membrane  apoptotic process  JNK cascade  tissue development  integral component of membrane  tumor necrosis factor-mediated signaling pathway  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of JNK cascade  
Pathways : KEGGCytokine-cytokine receptor interaction   
NDEx NetworkTNFRSF19
Atlas of Cancer Signalling NetworkTNFRSF19
Wikipedia pathwaysTNFRSF19
Orthology - Evolution
OrthoDB55504
GeneTree (enSembl)ENSG00000127863
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF19
HOVERGENQ9NS68
HOGENOMQ9NS68
Homologs : HomoloGeneTNFRSF19
Homology/Alignments : Family Browser (UCSC)TNFRSF19
Gene fusions - Rearrangements
Tumor Fusion PortalTNFRSF19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFRSF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFRSF19
dbVarTNFRSF19
ClinVarTNFRSF19
1000_GenomesTNFRSF19 
Exome Variant ServerTNFRSF19
ExAC (Exome Aggregation Consortium)ENSG00000127863
GNOMAD BrowserENSG00000127863
Genetic variants : HAPMAP55504
Genomic Variants (DGV)TNFRSF19 [DGVbeta]
DECIPHERTNFRSF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFRSF19 
Mutations
ICGC Data PortalTNFRSF19 
TCGA Data PortalTNFRSF19 
Broad Tumor PortalTNFRSF19
OASIS PortalTNFRSF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFRSF19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNFRSF19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNFRSF19
DgiDB (Drug Gene Interaction Database)TNFRSF19
DoCM (Curated mutations)TNFRSF19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNFRSF19 (select a term)
intoGenTNFRSF19
Cancer3DTNFRSF19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606122   
Orphanet
DisGeNETTNFRSF19
MedgenTNFRSF19
Genetic Testing Registry TNFRSF19
NextProtQ9NS68 [Medical]
TSGene55504
GENETestsTNFRSF19
Target ValidationTNFRSF19
Huge Navigator TNFRSF19 [HugePedia]
snp3D : Map Gene to Disease55504
BioCentury BCIQTNFRSF19
ClinGenTNFRSF19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55504
Chemical/Pharm GKB GenePA36608
Clinical trialTNFRSF19
Miscellaneous
canSAR (ICR)TNFRSF19 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFRSF19
EVEXTNFRSF19
GoPubMedTNFRSF19
iHOPTNFRSF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:39:04 CET 2017

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