Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TNFRSF19 (TNF receptor superfamily member 19)

Identity

Alias (NCBI)TAJ
TAJ-alpha
TRADE
TROY
HGNC (Hugo) TNFRSF19
HGNC Alias symbTAJ-alpha
TROY
TAJ
TRADE
HGNC Alias nametoxicity and JNK inducer
HGNC Previous nametumor necrosis factor receptor superfamily, member 19
LocusID (NCBI) 55504
Atlas_Id 42618
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 23570412 and ends at 23676093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TNFRSF19   11915
Cards
Entrez_Gene (NCBI)TNFRSF19    TNF receptor superfamily member 19
AliasesTAJ; TAJ-alpha; TRADE; TROY
GeneCards (Weizmann)TNFRSF19
Ensembl hg19 (Hinxton)ENSG00000127863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127863 [Gene_View]  ENSG00000127863 [Sequence]  chr13:23570412-23676093 [Contig_View]  TNFRSF19 [Vega]
ICGC DataPortalENSG00000127863
TCGA cBioPortalTNFRSF19
AceView (NCBI)TNFRSF19
Genatlas (Paris)TNFRSF19
SOURCE (Princeton)TNFRSF19
Genetics Home Reference (NIH)TNFRSF19
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF19  -     chr13:23570412-23676093 +  13q12.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF19  -     13q12.12   [Description]    (hg19-Feb_2009)
GoldenPathTNFRSF19 - 13q12.12 [CytoView hg19]  TNFRSF19 - 13q12.12 [CytoView hg38]
ImmunoBaseENSG00000127863
Genome Data Viewer NCBITNFRSF19 [Mapview hg19]  
OMIM606122   
Gene and transcription
Genbank (Entrez)AB040434 AF086276 AF167555 AF246998 AF246999
RefSeq transcript (Entrez)NM_001204458 NM_001204459 NM_001354985 NM_018647 NM_148957
Consensus coding sequences : CCDS (NCBI)TNFRSF19
Gene ExpressionTNFRSF19 [ NCBI-GEO ]   TNFRSF19 [ EBI - ARRAY_EXPRESS ]   TNFRSF19 [ SEEK ]   TNFRSF19 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF19 [ Firebrowse - Broad ]
GenevisibleExpression of TNFRSF19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55504
GTEX Portal (Tissue expression)TNFRSF19
Human Protein AtlasENSG00000127863-TNFRSF19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS68
PhosPhoSitePlusQ9NS68
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domains : Interpro (EBI)TNFR/NGFR_Cys_rich_reg    TNFR_19    TNFRSF19_N   
Domain families : Pfam (Sanger)TNFR_c6 (PF00020)   
Domain families : Pfam (NCBI)pfam00020   
Domain families : Smart (EMBL)TNFR (SM00208)  
Conserved Domain (NCBI)TNFRSF19
SuperfamilyQ9NS68
AlphaFold pdb e-kbQ9NS68   
Human Protein Atlas [tissue]ENSG00000127863-TNFRSF19 [tissue]
HPRD05838
Protein Interaction databases
DIP (DOE-UCLA)Q9NS68
IntAct (EBI)Q9NS68
BioGRIDTNFRSF19
STRING (EMBL)TNFRSF19
ZODIACTNFRSF19
Ontologies - Pathways
QuickGOQ9NS68
Ontology : AmiGOhair follicle development  tumor necrosis factor-activated receptor activity  protein binding  plasma membrane  apoptotic process  JNK cascade  integral component of membrane  tumor necrosis factor-mediated signaling pathway  signaling receptor activity  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of JNK cascade  
Ontology : EGO-EBIhair follicle development  tumor necrosis factor-activated receptor activity  protein binding  plasma membrane  apoptotic process  JNK cascade  integral component of membrane  tumor necrosis factor-mediated signaling pathway  signaling receptor activity  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of JNK cascade  
Pathways : KEGGCytokine-cytokine receptor interaction   
NDEx NetworkTNFRSF19
Atlas of Cancer Signalling NetworkTNFRSF19
Wikipedia pathwaysTNFRSF19
Orthology - Evolution
OrthoDB55504
GeneTree (enSembl)ENSG00000127863
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF19
Homologs : HomoloGeneTNFRSF19
Homology/Alignments : Family Browser (UCSC)TNFRSF19
Gene fusions - Rearrangements
Fusion : QuiverTNFRSF19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFRSF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFRSF19
dbVarTNFRSF19
ClinVarTNFRSF19
MonarchTNFRSF19
1000_GenomesTNFRSF19 
Exome Variant ServerTNFRSF19
GNOMAD BrowserENSG00000127863
Varsome BrowserTNFRSF19
ACMGTNFRSF19 variants
VarityQ9NS68
Genomic Variants (DGV)TNFRSF19 [DGVbeta]
DECIPHERTNFRSF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFRSF19 
Mutations
ICGC Data PortalTNFRSF19 
TCGA Data PortalTNFRSF19 
Broad Tumor PortalTNFRSF19
OASIS PortalTNFRSF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFRSF19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNFRSF19
Mutations and Diseases : HGMDTNFRSF19
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNFRSF19
DgiDB (Drug Gene Interaction Database)TNFRSF19
DoCM (Curated mutations)TNFRSF19
CIViC (Clinical Interpretations of Variants in Cancer)TNFRSF19
Cancer3DTNFRSF19
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606122   
Orphanet
DisGeNETTNFRSF19
MedgenTNFRSF19
Genetic Testing Registry TNFRSF19
NextProtQ9NS68 [Medical]
GENETestsTNFRSF19
Target ValidationTNFRSF19
Huge Navigator TNFRSF19 [HugePedia]
ClinGenTNFRSF19
Clinical trials, drugs, therapy
MyCancerGenomeTNFRSF19
Protein Interactions : CTDTNFRSF19
Pharm GKB GenePA36608
PharosQ9NS68
Clinical trialTNFRSF19
Miscellaneous
canSAR (ICR)TNFRSF19
HarmonizomeTNFRSF19
DataMed IndexTNFRSF19
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNFRSF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:35:43 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.