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TNFRSF19 (tumor necrosis factor receptor superfamily, member 19)

Identity

Other namesTAJ
TAJ-alpha
TRADE
TROY
HGNC (Hugo) TNFRSF19
LocusID (NCBI) 55504
Location 13q12.12
Location_base_pair Starts at 24153499 and ends at 24250244 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNFRSF19   11915
Cards
Entrez_Gene (NCBI)TNFRSF19  55504  tumor necrosis factor receptor superfamily, member 19
GeneCards (Weizmann)TNFRSF19
Ensembl (Hinxton)ENSG00000127863 [Gene_View]  chr13:24153499-24250244 [Contig_View]  TNFRSF19 [Vega]
ICGC DataPortalENSG00000127863
cBioPortalTNFRSF19
AceView (NCBI)TNFRSF19
Genatlas (Paris)TNFRSF19
WikiGenes55504
SOURCE (Princeton)NM_001204458 NM_001204459 NM_018647 NM_148957
Genomic and cartography
GoldenPath (UCSC)TNFRSF19  -  13q12.12   chr13:24153499-24250244 +  13q12.12   [Description]    (hg19-Feb_2009)
EnsemblTNFRSF19 - 13q12.12 [CytoView]
Mapping of homologs : NCBITNFRSF19 [Mapview]
OMIM606122   
Gene and transcription
Genbank (Entrez)AB040434 AF086276 AF167555 AF246998 AF246999
RefSeq transcript (Entrez)NM_001204458 NM_001204459 NM_018647 NM_148957
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838070 NW_004929388
Consensus coding sequences : CCDS (NCBI)TNFRSF19
Cluster EST : UnigeneHs.730848 [ NCBI ]
CGAP (NCI)Hs.730848
Alternative Splicing : Fast-db (Paris)GSHG0007985
Alternative Splicing GalleryENSG00000127863
Gene ExpressionTNFRSF19 [ NCBI-GEO ]     TNFRSF19 [ SEEK ]   TNFRSF19 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS68 (Uniprot)
NextProtQ9NS68  [Medical]
With graphics : InterProQ9NS68
Splice isoforms : SwissVarQ9NS68 (Swissvar)
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domains : Interpro (EBI)TNFR/NGFR_Cys_rich_reg [organisation]   TNFR_19 [organisation]  
Related proteins : CluSTrQ9NS68
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TNFR (SM00208)  
DMDM Disease mutations55504
Blocks (Seattle)Q9NS68
Human Protein AtlasENSG00000127863 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9NS68
HPRD05838
IPIIPI00100067   IPI00219480   IPI01008771   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS68
IntAct (EBI)Q9NS68
FunCoupENSG00000127863
BioGRIDTNFRSF19
InParanoidQ9NS68
Interologous Interaction database Q9NS68
IntegromeDBTNFRSF19
STRING (EMBL)TNFRSF19
Ontologies - Pathways
Ontology : AmiGOhair follicle development  tumor necrosis factor-activated receptor activity  apoptotic process  JNK cascade  integral component of membrane  tumor necrosis factor-mediated signaling pathway  positive regulation of I-kappaB kinase/NF-kappaB signaling  
Ontology : EGO-EBIhair follicle development  tumor necrosis factor-activated receptor activity  apoptotic process  JNK cascade  integral component of membrane  tumor necrosis factor-mediated signaling pathway  positive regulation of I-kappaB kinase/NF-kappaB signaling  
Pathways : KEGGCytokine-cytokine receptor interaction   
Protein Interaction DatabaseTNFRSF19
Wikipedia pathwaysTNFRSF19
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TNFRSF19
snp3D : Map Gene to Disease55504
SNP (GeneSNP Utah)TNFRSF19
SNP : HGBaseTNFRSF19
Genetic variants : HAPMAPTNFRSF19
Exome VariantTNFRSF19
1000_GenomesTNFRSF19 
ICGC programENSG00000127863 
Somatic Mutations in Cancer : COSMICTNFRSF19 
CONAN: Copy Number AnalysisTNFRSF19 
Mutations and Diseases : HGMDTNFRSF19
Genomic VariantsTNFRSF19  TNFRSF19 [DGVbeta]
dbVarTNFRSF19
ClinVarTNFRSF19
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM606122   
MedgenTNFRSF19
GENETestsTNFRSF19
Disease Genetic AssociationTNFRSF19
Huge Navigator TNFRSF19 [HugePedia]  TNFRSF19 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTNFRSF19
Homology/Alignments : Family Browser (UCSC)TNFRSF19
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF19
Chemical/Protein Interactions : CTD55504
Chemical/Pharm GKB GenePA36608
Clinical trialTNFRSF19
Cancer Resource (Charite)ENSG00000127863
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
CoreMineTNFRSF19
iHOPTNFRSF19
OncoSearchTNFRSF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:50:25 CEST 2014

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