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TNFRSF21 (TNF receptor superfamily member 21)

Identity

Alias_namestumor necrosis factor receptor superfamily, member 21
Alias_symbol (synonym)DR6
CD358
Other aliasBM-018
HGNC (Hugo) TNFRSF21
LocusID (NCBI) 27242
Atlas_Id 42622
Location 6p12.3  [Link to chromosome band 6p12]
Location_base_pair Starts at 47231527 and ends at 47309947 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADGRF1 (6p12.3) / TNFRSF21 (6p12.3)RPL13 (16q24.3) / TNFRSF21 (6p12.3)SLC22A23 (6p25.2) / TNFRSF21 (6p12.3)
TNFRSF21 (6p12.3) / MAMLD1 (Xq28)SLC22A23 6p25.2 / TNFRSF21 6p12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t0606p12p25ID107052


External links

Nomenclature
HGNC (Hugo)TNFRSF21   13469
Cards
Entrez_Gene (NCBI)TNFRSF21  27242  TNF receptor superfamily member 21
AliasesBM-018; CD358; DR6
GeneCards (Weizmann)TNFRSF21
Ensembl hg19 (Hinxton)ENSG00000146072 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146072 [Gene_View]  ENSG00000146072 [Sequence]  chr6:47231527-47309947 [Contig_View]  TNFRSF21 [Vega]
ICGC DataPortalENSG00000146072
TCGA cBioPortalTNFRSF21
AceView (NCBI)TNFRSF21
Genatlas (Paris)TNFRSF21
WikiGenes27242
SOURCE (Princeton)TNFRSF21
Genetics Home Reference (NIH)TNFRSF21
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF21  -     chr6:47231527-47309947 -  6p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF21  -     6p12.3   [Description]    (hg19-Feb_2009)
GoldenPathTNFRSF21 - 6p12.3 [CytoView hg19]  TNFRSF21 - 6p12.3 [CytoView hg38]
ImmunoBaseENSG00000146072
Mapping of homologs : NCBITNFRSF21 [Mapview hg19]  TNFRSF21 [Mapview hg38]
OMIM605732   
Gene and transcription
Genbank (Entrez)AB209394 AF068868 AF208860 AJ420531 AK001504
RefSeq transcript (Entrez)NM_014452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFRSF21
Alternative Splicing GalleryENSG00000146072
Gene ExpressionTNFRSF21 [ NCBI-GEO ]   TNFRSF21 [ EBI - ARRAY_EXPRESS ]   TNFRSF21 [ SEEK ]   TNFRSF21 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)27242
GTEX Portal (Tissue expression)TNFRSF21
Human Protein AtlasENSG00000146072-TNFRSF21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNFRSF21
DMDM Disease mutations27242
Blocks (Seattle)TNFRSF21
Human Protein Atlas [tissue]ENSG00000146072-TNFRSF21 [tissue]
HPRD05759
IPIIPI00004413   IPI00940125   IPI00386244   
Protein Interaction databases
FunCoupENSG00000146072
BioGRIDTNFRSF21
STRING (EMBL)TNFRSF21
ZODIACTNFRSF21
Ontologies - Pathways
Huge Navigator TNFRSF21 [HugePedia]
snp3D : Map Gene to Disease27242
BioCentury BCIQTNFRSF21
ClinGenTNFRSF21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27242
Chemical/Pharm GKB GenePA37775
Clinical trialTNFRSF21
Miscellaneous
canSAR (ICR)TNFRSF21 (select the gene name)
DataMed IndexTNFRSF21
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFRSF21
EVEXTNFRSF21
GoPubMedTNFRSF21
iHOPTNFRSF21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:13:39 CET 2020

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