Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TNFRSF21 (TNF receptor superfamily member 21)

Identity

Alias (NCBI)BM-018
CD358
DR6
HGNC (Hugo) TNFRSF21
HGNC Alias symbDR6
CD358
HGNC Alias namedeath receptor 6
HGNC Previous nametumor necrosis factor receptor superfamily, member 21
LocusID (NCBI) 27242
Atlas_Id 42622
Location 6p12.3  [Link to chromosome band 6p12]
Location_base_pair Starts at 47231532 and ends at 47309905 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADGRF1 (6p12.3) / TNFRSF21 (6p12.3)RPL13 (16q24.3) / TNFRSF21 (6p12.3)SLC22A23 (6p25.2) / TNFRSF21 (6p12.3)
TNFRSF21 (6p12.3) / MAMLD1 (Xq28)SLC22A23 6p25.2 / TNFRSF21 6p12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)TNFRSF21   13469
Cards
Entrez_Gene (NCBI)TNFRSF21    TNF receptor superfamily member 21
AliasesBM-018; CD358; DR6
GeneCards (Weizmann)TNFRSF21
Ensembl hg19 (Hinxton)ENSG00000146072 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146072 [Gene_View]  ENSG00000146072 [Sequence]  chr6:47231532-47309905 [Contig_View]  TNFRSF21 [Vega]
ICGC DataPortalENSG00000146072
TCGA cBioPortalTNFRSF21
AceView (NCBI)TNFRSF21
Genatlas (Paris)TNFRSF21
SOURCE (Princeton)TNFRSF21
Genetics Home Reference (NIH)TNFRSF21
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF21  -     chr6:47231532-47309905 -  6p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF21  -     6p12.3   [Description]    (hg19-Feb_2009)
GoldenPathTNFRSF21 - 6p12.3 [CytoView hg19]  TNFRSF21 - 6p12.3 [CytoView hg38]
ImmunoBaseENSG00000146072
Genome Data Viewer NCBITNFRSF21 [Mapview hg19]  
OMIM605732   
Gene and transcription
Genbank (Entrez)AB209394 AF068868 AF208860 AJ420531 AK001504
RefSeq transcript (Entrez)NM_014452
Consensus coding sequences : CCDS (NCBI)TNFRSF21
Gene ExpressionTNFRSF21 [ NCBI-GEO ]   TNFRSF21 [ EBI - ARRAY_EXPRESS ]   TNFRSF21 [ SEEK ]   TNFRSF21 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF21 [ Firebrowse - Broad ]
GenevisibleExpression of TNFRSF21 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27242
GTEX Portal (Tissue expression)TNFRSF21
Human Protein AtlasENSG00000146072-TNFRSF21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75509   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75509  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75509
PhosPhoSitePlusO75509
Domaine pattern : Prosite (Expaxy)DEATH_DOMAIN (PS50017)    TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domains : Interpro (EBI)DEATH-like_dom_sf    Death_domain    TNFR/NGFR_Cys_rich_reg    TNFR_21    TNFRSF21_death    TNFRSF21_N    Tyr-kin_ephrin_A/B_rcpt-like   
Domain families : Pfam (Sanger)Death (PF00531)    TNFR_c6 (PF00020)   
Domain families : Pfam (NCBI)pfam00531    pfam00020   
Domain families : Smart (EMBL)DEATH (SM00005)  Ephrin_rec_like (SM01411)  TNFR (SM00208)  
Conserved Domain (NCBI)TNFRSF21
PDB (RSDB)2DBH    3QO4    3U3P    3U3Q    3U3S    3U3T    3U3V   
PDB Europe2DBH    3QO4    3U3P    3U3Q    3U3S    3U3T    3U3V   
PDB (PDBSum)2DBH    3QO4    3U3P    3U3Q    3U3S    3U3T    3U3V   
PDB (IMB)2DBH    3QO4    3U3P    3U3Q    3U3S    3U3T    3U3V   
Structural Biology KnowledgeBase2DBH    3QO4    3U3P    3U3Q    3U3S    3U3T    3U3V   
SCOP (Structural Classification of Proteins)2DBH    3QO4    3U3P    3U3Q    3U3S    3U3T    3U3V   
CATH (Classification of proteins structures)2DBH    3QO4    3U3P    3U3Q    3U3S    3U3T    3U3V   
SuperfamilyO75509
AlphaFold pdb e-kbO75509   
Human Protein Atlas [tissue]ENSG00000146072-TNFRSF21 [tissue]
HPRD05759
Protein Interaction databases
DIP (DOE-UCLA)O75509
IntAct (EBI)O75509
BioGRIDTNFRSF21
STRING (EMBL)TNFRSF21
ZODIACTNFRSF21
Ontologies - Pathways
QuickGOO75509
Ontology : AmiGOB cell apoptotic process  adaptive immune response  adaptive immune response  protein binding  cytoplasm  plasma membrane  integral component of plasma membrane  integral component of plasma membrane  apoptotic process  humoral immune response  humoral immune response  axonal fasciculation  regulation of metabolic process  axon  negative regulation of B cell proliferation  negative regulation of B cell proliferation  intrinsic component of plasma membrane  negative regulation of myelination  negative regulation of myelination  negative regulation of interleukin-10 production  negative regulation of interleukin-13 production  negative regulation of interleukin-5 production  negative regulation of T cell proliferation  negative regulation of T cell proliferation  myelination  regulation of oligodendrocyte differentiation  T cell receptor signaling pathway  neuron apoptotic process  neuron apoptotic process  cellular response to tumor necrosis factor  oligodendrocyte apoptotic process  oligodendrocyte apoptotic process  
Ontology : EGO-EBIB cell apoptotic process  adaptive immune response  adaptive immune response  protein binding  cytoplasm  plasma membrane  integral component of plasma membrane  integral component of plasma membrane  apoptotic process  humoral immune response  humoral immune response  axonal fasciculation  regulation of metabolic process  axon  negative regulation of B cell proliferation  negative regulation of B cell proliferation  intrinsic component of plasma membrane  negative regulation of myelination  negative regulation of myelination  negative regulation of interleukin-10 production  negative regulation of interleukin-13 production  negative regulation of interleukin-5 production  negative regulation of T cell proliferation  negative regulation of T cell proliferation  myelination  regulation of oligodendrocyte differentiation  T cell receptor signaling pathway  neuron apoptotic process  neuron apoptotic process  cellular response to tumor necrosis factor  oligodendrocyte apoptotic process  oligodendrocyte apoptotic process  
Pathways : KEGGCytokine-cytokine receptor interaction   
NDEx NetworkTNFRSF21
Atlas of Cancer Signalling NetworkTNFRSF21
Wikipedia pathwaysTNFRSF21
Orthology - Evolution
OrthoDB27242
GeneTree (enSembl)ENSG00000146072
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF21
Homologs : HomoloGeneTNFRSF21
Homology/Alignments : Family Browser (UCSC)TNFRSF21
Gene fusions - Rearrangements
Fusion : MitelmanSLC22A23/TNFRSF21 [6p25.2/6p12.3]  
Fusion : QuiverTNFRSF21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNFRSF21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFRSF21
dbVarTNFRSF21
ClinVarTNFRSF21
MonarchTNFRSF21
1000_GenomesTNFRSF21 
Exome Variant ServerTNFRSF21
GNOMAD BrowserENSG00000146072
Varsome BrowserTNFRSF21
ACMGTNFRSF21 variants
VarityO75509
Genomic Variants (DGV)TNFRSF21 [DGVbeta]
DECIPHERTNFRSF21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNFRSF21 
Mutations
ICGC Data PortalTNFRSF21 
TCGA Data PortalTNFRSF21 
Broad Tumor PortalTNFRSF21
OASIS PortalTNFRSF21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFRSF21  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNFRSF21
Mutations and Diseases : HGMDTNFRSF21
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNFRSF21
DgiDB (Drug Gene Interaction Database)TNFRSF21
DoCM (Curated mutations)TNFRSF21
CIViC (Clinical Interpretations of Variants in Cancer)TNFRSF21
Cancer3DTNFRSF21
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605732   
Orphanet
DisGeNETTNFRSF21
MedgenTNFRSF21
Genetic Testing Registry TNFRSF21
NextProtO75509 [Medical]
GENETestsTNFRSF21
Target ValidationTNFRSF21
Huge Navigator TNFRSF21 [HugePedia]
ClinGenTNFRSF21
Clinical trials, drugs, therapy
MyCancerGenomeTNFRSF21
Protein Interactions : CTDTNFRSF21
Pharm GKB GenePA37775
PharosO75509
Clinical trialTNFRSF21
Miscellaneous
canSAR (ICR)TNFRSF21
HarmonizomeTNFRSF21
DataMed IndexTNFRSF21
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNFRSF21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:44 CEST 2021
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