Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TNFRSF25 (TNF receptor superfamily member 25)

Identity

Alias (NCBI)APO-3
DDR3
DR3
GEF720
LARD
PLEKHG5
TNFRSF12
TR3
TRAMP
WSL-1
WSL-LR
HGNC (Hugo) TNFRSF25
HGNC Alias symbDR3
TRAMP
WSL-1
LARD
WSL-LR
DDR3
TR3
APO-3
HGNC Previous nameTNFRSF12
HGNC Previous nametumor necrosis factor receptor superfamily, member 12 (translocating chain-association membrane protein)
 tumor necrosis factor receptor superfamily, member 25
LocusID (NCBI) 8718
Atlas_Id 42625
Location 1p36.31  [Link to chromosome band 1p36]
Location_base_pair Starts at 6461154 and ends at 6466195 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TNFRSF25   11910
Cards
Entrez_Gene (NCBI)TNFRSF25    TNF receptor superfamily member 25
AliasesAPO-3; DDR3; DR3; GEF720; 
LARD; PLEKHG5; TNFRSF12; TR3; TRAMP; WSL-1; WSL-LR
GeneCards (Weizmann)TNFRSF25
Ensembl hg19 (Hinxton)ENSG00000215788 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215788 [Gene_View]  ENSG00000215788 [Sequence]  chr1:6461154-6466195 [Contig_View]  TNFRSF25 [Vega]
ICGC DataPortalENSG00000215788
TCGA cBioPortalTNFRSF25
AceView (NCBI)TNFRSF25
Genatlas (Paris)TNFRSF25
SOURCE (Princeton)TNFRSF25
Genetics Home Reference (NIH)TNFRSF25
Genomic and cartography
GoldenPath hg38 (UCSC)TNFRSF25  -     chr1:6461154-6466195 -  1p36.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFRSF25  -     1p36.31   [Description]    (hg19-Feb_2009)
GoldenPathTNFRSF25 - 1p36.31 [CytoView hg19]  TNFRSF25 - 1p36.31 [CytoView hg38]
ImmunoBaseENSG00000215788
genome Data Viewer NCBITNFRSF25 [Mapview hg19]  
OMIM603366   
Gene and transcription
Genbank (Entrez)AB308321 AF026070 AF026071 AK094463 AY358309
RefSeq transcript (Entrez)NM_001039664 NM_003790 NM_148965 NM_148966 NM_148967 NM_148968 NM_148969 NM_148970 NM_148974
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFRSF25
Alternative Splicing GalleryENSG00000215788
Gene ExpressionTNFRSF25 [ NCBI-GEO ]   TNFRSF25 [ EBI - ARRAY_EXPRESS ]   TNFRSF25 [ SEEK ]   TNFRSF25 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF25 [ Firebrowse - Broad ]
GenevisibleExpression of TNFRSF25 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8718
GTEX Portal (Tissue expression)TNFRSF25
Human Protein AtlasENSG00000215788-TNFRSF25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNFRSF25
Blocks (Seattle)TNFRSF25
Human Protein Atlas [tissue]ENSG00000215788-TNFRSF25 [tissue]
HPRD04532
IPIIPI00003999   IPI00220675   IPI00220676   IPI00220677   IPI00219572   IPI00219573   IPI00299520   IPI00514425   IPI00219577   IPI00219578   IPI00219579   IPI00219580   IPI00513988   
Protein Interaction databases
BioGRIDTNFRSF25
STRING (EMBL)TNFRSF25
ZODIACTNFRSF25
Ontologies - Pathways
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNFRSF25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:50:15 CET 2021

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