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TNFRSF9 (tumor necrosis factor receptor superfamily, member 9)

Identity

Other names4-1BB
CD137
CDw137
ILA
HGNC (Hugo) TNFRSF9
LocusID (NCBI) 3604
Location 1p36.23
Location_base_pair Starts at 7975931 and ends at 8003225 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNFRSF9   11924
Cards
Entrez_Gene (NCBI)TNFRSF9  3604  tumor necrosis factor receptor superfamily, member 9
GeneCards (Weizmann)TNFRSF9
Ensembl (Hinxton) [Gene_View]  chr1:7975931-8003225 [Contig_View]  TNFRSF9 [Vega]
cBioPortalTNFRSF9
AceView (NCBI)TNFRSF9
Genatlas (Paris)TNFRSF9
WikiGenes3604
SOURCE (Princeton)NM_001561
Genomic and cartography
GoldenPath (UCSC)TNFRSF9  -  1p36.23   chr1:7975931-8003225 -  1p36.23   [Description]    (hg19-Feb_2009)
EnsemblTNFRSF9 - 1p36.23 [CytoView]
Mapping of homologs : NCBITNFRSF9 [Mapview]
OMIM602250   
Gene and transcription
Genbank (Entrez)AK125490 AW449076 BC006196 BP381234 DQ892697
RefSeq transcript (Entrez)NM_001561
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838523 NW_004929289
Consensus coding sequences : CCDS (NCBI)TNFRSF9
Cluster EST : UnigeneHs.738942 [ NCBI ]
CGAP (NCI)Hs.738942
Alternative Splicing : Fast-db (Paris)GSHG0001722
Gene ExpressionTNFRSF9 [ NCBI-GEO ]     TNFRSF9 [ SEEK ]   TNFRSF9 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07011 (Uniprot)
NextProtQ07011  [Medical]
With graphics : InterProQ07011
Splice isoforms : SwissVarQ07011 (Swissvar)
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domains : Interpro (EBI)Growth_fac_rcpt_N_dom [organisation]   TNFR/NGFR_Cys_rich_reg [organisation]   TNFR_9 [organisation]  
Related proteins : CluSTrQ07011
Domain families : Pfam (Sanger)TNFR_c6 (PF00020)   
Domain families : Pfam (NCBI)pfam00020   
Domain families : Smart (EMBL)TNFR (SM00208)  
DMDM Disease mutations3604
Blocks (Seattle)Q07011
Peptide AtlasQ07011
HPRD03767
IPIIPI00549343   
Protein Interaction databases
DIP (DOE-UCLA)Q07011
IntAct (EBI)Q07011
BioGRIDTNFRSF9
InParanoidQ07011
Interologous Interaction database Q07011
IntegromeDBTNFRSF9
STRING (EMBL)TNFRSF9
Ontologies - Pathways
Ontology : AmiGOreceptor activity  extracellular space  integral component of plasma membrane  apoptotic process  negative regulation of cell proliferation  external side of plasma membrane  cytokine binding  protein homotrimerization  negative regulation of interleukin-10 secretion  negative regulation of interleukin-12 secretion  
Ontology : EGO-EBIreceptor activity  extracellular space  integral component of plasma membrane  apoptotic process  negative regulation of cell proliferation  external side of plasma membrane  cytokine binding  protein homotrimerization  negative regulation of interleukin-10 secretion  negative regulation of interleukin-12 secretion  
Pathways : BIOCARTAThe 4-1BB-dependent immune response [Genes]   
Pathways : KEGGCytokine-cytokine receptor interaction   
Protein Interaction DatabaseTNFRSF9
Wikipedia pathwaysTNFRSF9
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TNFRSF9
snp3D : Map Gene to Disease3604
SNP (GeneSNP Utah)TNFRSF9
SNP : HGBaseTNFRSF9
Genetic variants : HAPMAPTNFRSF9
Exome VariantTNFRSF9
1000_GenomesTNFRSF9 
Somatic Mutations in Cancer : COSMICTNFRSF9 
CONAN: Copy Number AnalysisTNFRSF9 
Mutations and Diseases : HGMDTNFRSF9
Genomic VariantsTNFRSF9  TNFRSF9 [DGVbeta]
dbVarTNFRSF9
ClinVarTNFRSF9
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM602250   
MedgenTNFRSF9
GENETestsTNFRSF9
Disease Genetic AssociationTNFRSF9
Huge Navigator TNFRSF9 [HugePedia]  TNFRSF9 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTNFRSF9
Homology/Alignments : Family Browser (UCSC)TNFRSF9
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF9
Chemical/Protein Interactions : CTD3604
Chemical/Pharm GKB GenePA36617
Clinical trialTNFRSF9
Other databases
Probes
Litterature
PubMed93 Pubmed reference(s) in Entrez
CoreMineTNFRSF9
iHOPTNFRSF9
OncoSearchTNFRSF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:19:13 CEST 2014

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