Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TNFSF8 (TNF superfamily member 8)

Identity

Alias_namesCD30LG
tumor necrosis factor (ligand) superfamily, member 8
Alias_symbol (synonym)CD153
Other aliasCD30L
TNLG3A
HGNC (Hugo) TNFSF8
LocusID (NCBI) 944
Atlas_Id 42644
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 114893343 and ends at 114930595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNFSF8   11938
Cards
Entrez_Gene (NCBI)TNFSF8  944  TNF superfamily member 8
AliasesCD153; CD30L; CD30LG; TNLG3A
GeneCards (Weizmann)TNFSF8
Ensembl hg19 (Hinxton)ENSG00000106952 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106952 [Gene_View]  ENSG00000106952 [Sequence]  chr9:114893343-114930595 [Contig_View]  TNFSF8 [Vega]
ICGC DataPortalENSG00000106952
TCGA cBioPortalTNFSF8
AceView (NCBI)TNFSF8
Genatlas (Paris)TNFSF8
WikiGenes944
SOURCE (Princeton)TNFSF8
Genetics Home Reference (NIH)TNFSF8
Genomic and cartography
GoldenPath hg38 (UCSC)TNFSF8  -     chr9:114893343-114930595 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNFSF8  -     9q32   [Description]    (hg19-Feb_2009)
GoldenPathTNFSF8 - 9q32 [CytoView hg19]  TNFSF8 - 9q32 [CytoView hg38]
ImmunoBaseENSG00000106952
Mapping of homologs : NCBITNFSF8 [Mapview hg19]  TNFSF8 [Mapview hg38]
OMIM603875   
Gene and transcription
Genbank (Entrez)AA748015 AK313619 AL583443 AW118787 BC093630
RefSeq transcript (Entrez)NM_001244 NM_001252290
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNFSF8
Alternative Splicing GalleryENSG00000106952
Gene ExpressionTNFSF8 [ NCBI-GEO ]   TNFSF8 [ EBI - ARRAY_EXPRESS ]   TNFSF8 [ SEEK ]   TNFSF8 [ MEM ]
Gene Expression Viewer (FireBrowse)TNFSF8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)944
GTEX Portal (Tissue expression)TNFSF8
Human Protein AtlasENSG00000106952-TNFSF8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNFSF8
DMDM Disease mutations944
Blocks (Seattle)TNFSF8
Human Protein Atlas [tissue]ENSG00000106952-TNFSF8 [tissue]
HPRD04852
IPIIPI00031715   
Protein Interaction databases
FunCoupENSG00000106952
BioGRIDTNFSF8
STRING (EMBL)TNFSF8
ZODIACTNFSF8
Ontologies - Pathways
Huge Navigator TNFSF8 [HugePedia]
snp3D : Map Gene to Disease944
BioCentury BCIQTNFSF8
ClinGenTNFSF8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD944
Chemical/Pharm GKB GenePA36628
Clinical trialTNFSF8
Miscellaneous
canSAR (ICR)TNFSF8 (select the gene name)
DataMed IndexTNFSF8
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFSF8
EVEXTNFSF8
GoPubMedTNFSF8
iHOPTNFSF8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:13:41 CET 2020

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