Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TNIP1 (TNFAIP3 interacting protein 1)

Identity

Alias (NCBI)ABIN-1
NAF1
VAN
nip40-1
HGNC (Hugo) TNIP1
HGNC Alias symbNAF1
KIAA0113
ABIN-1
VAN
HGNC Alias namevirion-associated nuclear-shuttling protein
 Nef-associated factor 1 SNP
LocusID (NCBI) 10318
Atlas_Id 50501
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 151029945 and ends at 151081034 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GRIP1 (12q14.3) / TNIP1 (5q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(5;5)(q32;q33) TNIP1/PDGFRB


External links

Nomenclature
HGNC (Hugo)TNIP1   16903
Cards
Entrez_Gene (NCBI)TNIP1    TNFAIP3 interacting protein 1
AliasesABIN-1; NAF1; VAN; nip40-1
GeneCards (Weizmann)TNIP1
Ensembl hg19 (Hinxton)ENSG00000145901 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145901 [Gene_View]  ENSG00000145901 [Sequence]  chr5:151029945-151081034 [Contig_View]  TNIP1 [Vega]
ICGC DataPortalENSG00000145901
TCGA cBioPortalTNIP1
AceView (NCBI)TNIP1
Genatlas (Paris)TNIP1
SOURCE (Princeton)TNIP1
Genetics Home Reference (NIH)TNIP1
Genomic and cartography
GoldenPath hg38 (UCSC)TNIP1  -     chr5:151029945-151081034 -  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNIP1  -     5q33.1   [Description]    (hg19-Feb_2009)
GoldenPathTNIP1 - 5q33.1 [CytoView hg19]  TNIP1 - 5q33.1 [CytoView hg38]
ImmunoBaseENSG00000145901
Genome Data Viewer NCBITNIP1 [Mapview hg19]  
OMIM607714   
Gene and transcription
Genbank (Entrez)AB177543 AB177544 AB252970 AB252971 AB252972
RefSeq transcript (Entrez)NM_001252385 NM_001252386 NM_001252390 NM_001252391 NM_001252392 NM_001252393 NM_001258454 NM_001258455 NM_001258456 NM_001364486 NM_001364487 NM_006058
Consensus coding sequences : CCDS (NCBI)TNIP1
Gene ExpressionTNIP1 [ NCBI-GEO ]   TNIP1 [ EBI - ARRAY_EXPRESS ]   TNIP1 [ SEEK ]   TNIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TNIP1 [ Firebrowse - Broad ]
GenevisibleExpression of TNIP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10318
GTEX Portal (Tissue expression)TNIP1
Human Protein AtlasENSG00000145901-TNIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNIP1
Human Protein Atlas [tissue]ENSG00000145901-TNIP1 [tissue]
HPRD09216
Protein Interaction databases
BioGRIDTNIP1
STRING (EMBL)TNIP1
ZODIACTNIP1
Ontologies - Pathways
Litterature
PubMed151 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:35:46 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.