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TNMD (tenomodulin)

Identity

Alias_symbol (synonym)myodulin
ChM1L
tendin
TEM
BRICD4
Other aliasCHM1L
HGNC (Hugo) TNMD
LocusID (NCBI) 64102
Atlas_Id 56201
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 100584793 and ends at 100599885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNMD   17757
Cards
Entrez_Gene (NCBI)TNMD  64102  tenomodulin
AliasesBRICD4; CHM1L; TEM
GeneCards (Weizmann)TNMD
Ensembl hg19 (Hinxton)ENSG00000000005 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000000005 [Gene_View]  chrX:100584793-100599885 [Contig_View]  TNMD [Vega]
ICGC DataPortalENSG00000000005
TCGA cBioPortalTNMD
AceView (NCBI)TNMD
Genatlas (Paris)TNMD
WikiGenes64102
SOURCE (Princeton)TNMD
Genetics Home Reference (NIH)TNMD
Genomic and cartography
GoldenPath hg38 (UCSC)TNMD  -     chrX:100584793-100599885 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNMD  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblTNMD - Xq22.1 [CytoView hg19]  TNMD - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBITNMD [Mapview hg19]  TNMD [Mapview hg38]
OMIM300459   
Gene and transcription
Genbank (Entrez)AB055421 AF191770 AF234259 AF291656 AY358706
RefSeq transcript (Entrez)NM_022144
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNMD
Cluster EST : UnigeneHs.132957 [ NCBI ]
CGAP (NCI)Hs.132957
Alternative Splicing GalleryENSG00000000005
Gene ExpressionTNMD [ NCBI-GEO ]   TNMD [ EBI - ARRAY_EXPRESS ]   TNMD [ SEEK ]   TNMD [ MEM ]
Gene Expression Viewer (FireBrowse)TNMD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64102
GTEX Portal (Tissue expression)TNMD
Human Protein AtlasENSG00000000005-TNMD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2S6
Splice isoforms : SwissVarQ9H2S6
PhosPhoSitePlusQ9H2S6
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)   
Domains : Interpro (EBI)BRICHOS_dom   
Domain families : Pfam (Sanger)BRICHOS (PF04089)   
Domain families : Pfam (NCBI)pfam04089   
Domain families : Smart (EMBL)BRICHOS (SM01039)  
Conserved Domain (NCBI)TNMD
DMDM Disease mutations64102
Blocks (Seattle)TNMD
SuperfamilyQ9H2S6
Human Protein Atlas [tissue]ENSG00000000005-TNMD [tissue]
Peptide AtlasQ9H2S6
HPRD02352
IPIIPI00301076   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2S6
IntAct (EBI)Q9H2S6
FunCoupENSG00000000005
BioGRIDTNMD
STRING (EMBL)TNMD
ZODIACTNMD
Ontologies - Pathways
QuickGOQ9H2S6
Ontology : AmiGOendothelial cell morphogenesis  negative regulation of endothelial cell proliferation  protein binding  nuclear envelope  cytoplasm  integral component of membrane  negative regulation of angiogenesis  tendon cell differentiation  cellular response to BMP stimulus  
Ontology : EGO-EBIendothelial cell morphogenesis  negative regulation of endothelial cell proliferation  protein binding  nuclear envelope  cytoplasm  integral component of membrane  negative regulation of angiogenesis  tendon cell differentiation  cellular response to BMP stimulus  
NDEx NetworkTNMD
Atlas of Cancer Signalling NetworkTNMD
Wikipedia pathwaysTNMD
Orthology - Evolution
OrthoDB64102
GeneTree (enSembl)ENSG00000000005
Phylogenetic Trees/Animal Genes : TreeFamTNMD
HOVERGENQ9H2S6
HOGENOMQ9H2S6
Homologs : HomoloGeneTNMD
Homology/Alignments : Family Browser (UCSC)TNMD
Gene fusions - Rearrangements
Tumor Fusion PortalTNMD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNMD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNMD
dbVarTNMD
ClinVarTNMD
1000_GenomesTNMD 
Exome Variant ServerTNMD
ExAC (Exome Aggregation Consortium)ENSG00000000005
GNOMAD BrowserENSG00000000005
Genetic variants : HAPMAP64102
Genomic Variants (DGV)TNMD [DGVbeta]
DECIPHERTNMD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNMD 
Mutations
ICGC Data PortalTNMD 
TCGA Data PortalTNMD 
Broad Tumor PortalTNMD
OASIS PortalTNMD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNMD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNMD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TNMD
DgiDB (Drug Gene Interaction Database)TNMD
DoCM (Curated mutations)TNMD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNMD (select a term)
intoGenTNMD
Cancer3DTNMD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300459   
Orphanet
DisGeNETTNMD
MedgenTNMD
Genetic Testing Registry TNMD
NextProtQ9H2S6 [Medical]
TSGene64102
GENETestsTNMD
Target ValidationTNMD
Huge Navigator TNMD [HugePedia]
snp3D : Map Gene to Disease64102
BioCentury BCIQTNMD
ClinGenTNMD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64102
Chemical/Pharm GKB GenePA134878561
Clinical trialTNMD
Miscellaneous
canSAR (ICR)TNMD (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNMD
EVEXTNMD
GoPubMedTNMD
iHOPTNMD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:39:09 CET 2017

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