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TNMD (tenomodulin)

Identity

Alias (NCBI)BRICD4
CHM1L
TEM
HGNC (Hugo) TNMD
HGNC Alias symbmyodulin
ChM1L
tendin
TEM
BRICD4
HGNC Alias nameBRICHOS domain containing 4
LocusID (NCBI) 64102
Atlas_Id 56201
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 100584936 and ends at 100599885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TNMD   17757
Cards
Entrez_Gene (NCBI)TNMD    tenomodulin
AliasesBRICD4; CHM1L; TEM
GeneCards (Weizmann)TNMD
Ensembl hg19 (Hinxton)ENSG00000000005 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000000005 [Gene_View]  ENSG00000000005 [Sequence]  chrX:100584936-100599885 [Contig_View]  TNMD [Vega]
ICGC DataPortalENSG00000000005
TCGA cBioPortalTNMD
AceView (NCBI)TNMD
Genatlas (Paris)TNMD
SOURCE (Princeton)TNMD
Genetics Home Reference (NIH)TNMD
Genomic and cartography
GoldenPath hg38 (UCSC)TNMD  -     chrX:100584936-100599885 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNMD  -     Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPathTNMD - Xq22.1 [CytoView hg19]  TNMD - Xq22.1 [CytoView hg38]
ImmunoBaseENSG00000000005
Genome Data Viewer NCBITNMD [Mapview hg19]  
OMIM300459   
Gene and transcription
Genbank (Entrez)AB055421 AF191770 AF234259 AF291656 AY358706
RefSeq transcript (Entrez)NM_022144
Consensus coding sequences : CCDS (NCBI)TNMD
Gene ExpressionTNMD [ NCBI-GEO ]   TNMD [ EBI - ARRAY_EXPRESS ]   TNMD [ SEEK ]   TNMD [ MEM ]
Gene Expression Viewer (FireBrowse)TNMD [ Firebrowse - Broad ]
GenevisibleExpression of TNMD in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64102
GTEX Portal (Tissue expression)TNMD
Human Protein AtlasENSG00000000005-TNMD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2S6
PhosPhoSitePlusQ9H2S6
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)   
Domains : Interpro (EBI)BRICHOS_dom    Chondromodulin/Tenomodulin   
Domain families : Pfam (Sanger)BRICHOS (PF04089)   
Domain families : Pfam (NCBI)pfam04089   
Domain families : Smart (EMBL)BRICHOS (SM01039)  
Conserved Domain (NCBI)TNMD
SuperfamilyQ9H2S6
AlphaFold pdb e-kbQ9H2S6   
Human Protein Atlas [tissue]ENSG00000000005-TNMD [tissue]
HPRD02352
Protein Interaction databases
DIP (DOE-UCLA)Q9H2S6
IntAct (EBI)Q9H2S6
BioGRIDTNMD
STRING (EMBL)TNMD
ZODIACTNMD
Ontologies - Pathways
QuickGOQ9H2S6
Ontology : AmiGOendothelial cell morphogenesis  negative regulation of endothelial cell proliferation  protein binding  nuclear envelope  cytoplasm  integral component of membrane  negative regulation of angiogenesis  negative regulation of vascular endothelial growth factor receptor signaling pathway  tendon cell differentiation  cellular response to BMP stimulus  
Ontology : EGO-EBIendothelial cell morphogenesis  negative regulation of endothelial cell proliferation  protein binding  nuclear envelope  cytoplasm  integral component of membrane  negative regulation of angiogenesis  negative regulation of vascular endothelial growth factor receptor signaling pathway  tendon cell differentiation  cellular response to BMP stimulus  
NDEx NetworkTNMD
Atlas of Cancer Signalling NetworkTNMD
Wikipedia pathwaysTNMD
Orthology - Evolution
OrthoDB64102
GeneTree (enSembl)ENSG00000000005
Phylogenetic Trees/Animal Genes : TreeFamTNMD
Homologs : HomoloGeneTNMD
Homology/Alignments : Family Browser (UCSC)TNMD
Gene fusions - Rearrangements
Fusion : QuiverTNMD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNMD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNMD
dbVarTNMD
ClinVarTNMD
MonarchTNMD
1000_GenomesTNMD 
Exome Variant ServerTNMD
GNOMAD BrowserENSG00000000005
Varsome BrowserTNMD
ACMGTNMD variants
VarityQ9H2S6
Genomic Variants (DGV)TNMD [DGVbeta]
DECIPHERTNMD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNMD 
Mutations
ICGC Data PortalTNMD 
TCGA Data PortalTNMD 
Broad Tumor PortalTNMD
OASIS PortalTNMD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNMD  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNMD
Mutations and Diseases : HGMDTNMD
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNMD
DgiDB (Drug Gene Interaction Database)TNMD
DoCM (Curated mutations)TNMD
CIViC (Clinical Interpretations of Variants in Cancer)TNMD
Cancer3DTNMD
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300459   
Orphanet
DisGeNETTNMD
MedgenTNMD
Genetic Testing Registry TNMD
NextProtQ9H2S6 [Medical]
GENETestsTNMD
Target ValidationTNMD
Huge Navigator TNMD [HugePedia]
ClinGenTNMD
Clinical trials, drugs, therapy
MyCancerGenomeTNMD
Protein Interactions : CTDTNMD
Pharm GKB GenePA134878561
PharosQ9H2S6
Clinical trialTNMD
Miscellaneous
canSAR (ICR)TNMD
HarmonizomeTNMD
DataMed IndexTNMD
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNMD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:48 CEST 2021

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