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TNNC1 (troponin C1, slow skeletal and cardiac type)

Identity

Alias_namesTNNC
troponin C type 1 (slow)
Other aliasCMD1Z
CMH13
TN-C
TNC
HGNC (Hugo) TNNC1
LocusID (NCBI) 7134
Atlas_Id 55584
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 52451091 and ends at 52454041 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EIF4B (12q13.13) / TNNC1 (3p21.1)KITLG (12q21.32) / TNNC1 (3p21.1)SOX4 (6p22.3) / TNNC1 (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t0312p21q21ID105614


External links

Nomenclature
HGNC (Hugo)TNNC1   11943
LRG (Locus Reference Genomic)LRG_378
Cards
Entrez_Gene (NCBI)TNNC1  7134  troponin C1, slow skeletal and cardiac type
AliasesCMD1Z; CMH13; TN-C; TNC; 
TNNC
GeneCards (Weizmann)TNNC1
Ensembl hg19 (Hinxton)ENSG00000114854 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114854 [Gene_View]  ENSG00000114854 [Sequence]  chr3:52451091-52454041 [Contig_View]  TNNC1 [Vega]
ICGC DataPortalENSG00000114854
TCGA cBioPortalTNNC1
AceView (NCBI)TNNC1
Genatlas (Paris)TNNC1
WikiGenes7134
SOURCE (Princeton)TNNC1
Genetics Home Reference (NIH)TNNC1
Genomic and cartography
GoldenPath hg38 (UCSC)TNNC1  -     chr3:52451091-52454041 -  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNNC1  -     3p21.1   [Description]    (hg19-Feb_2009)
GoldenPathTNNC1 - 3p21.1 [CytoView hg19]  TNNC1 - 3p21.1 [CytoView hg38]
ImmunoBaseENSG00000114854
Mapping of homologs : NCBITNNC1 [Mapview hg19]  TNNC1 [Mapview hg38]
OMIM191040   611879   613243   
Gene and transcription
Genbank (Entrez)AF020769 AJ574625 AK313743 BC030244 CR541865
RefSeq transcript (Entrez)NM_003280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNNC1
Alternative Splicing GalleryENSG00000114854
Gene ExpressionTNNC1 [ NCBI-GEO ]   TNNC1 [ EBI - ARRAY_EXPRESS ]   TNNC1 [ SEEK ]   TNNC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TNNC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7134
GTEX Portal (Tissue expression)TNNC1
Human Protein AtlasENSG00000114854-TNNC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNNC1
DMDM Disease mutations7134
Blocks (Seattle)TNNC1
Human Protein Atlas [tissue]ENSG00000114854-TNNC1 [tissue]
HPRD08930
IPIIPI00470359   IPI00792280   
Protein Interaction databases
FunCoupENSG00000114854
BioGRIDTNNC1
STRING (EMBL)TNNC1
ZODIACTNNC1
Ontologies - Pathways
Huge Navigator TNNC1 [HugePedia]
snp3D : Map Gene to Disease7134
BioCentury BCIQTNNC1
ClinGenTNNC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7134
Chemical/Pharm GKB GenePA36632
Clinical trialTNNC1
Miscellaneous
canSAR (ICR)TNNC1 (select the gene name)
DataMed IndexTNNC1
Probes
Litterature
PubMed104 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNNC1
EVEXTNNC1
GoPubMedTNNC1
iHOPTNNC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:13:44 CET 2020

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