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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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TNNI2 (troponin I type 2 (skeletal, fast))

Identity

Other namesAMCD2B
DA2B
FSSV
fsTnI
HGNC (Hugo) TNNI2
LocusID (NCBI) 7136
Location 11p15.5
Location_base_pair Starts at 1860719 and ends at 1862910 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNNI2   11946
Cards
Entrez_Gene (NCBI)TNNI2  7136  troponin I type 2 (skeletal, fast)
GeneCards (Weizmann)TNNI2
Ensembl hg19 (Hinxton)ENSG00000130598 [Gene_View]  chr11:1860719-1862910 [Contig_View]  TNNI2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130598 [Gene_View]  chr11:1860719-1862910 [Contig_View]  TNNI2 [Vega]
ICGC DataPortalENSG00000130598
cBioPortalTNNI2
AceView (NCBI)TNNI2
Genatlas (Paris)TNNI2
WikiGenes7136
SOURCE (Princeton)TNNI2
Genomic and cartography
GoldenPath hg19 (UCSC)TNNI2  -     chr11:1860719-1862910 +  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TNNI2  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblTNNI2 - 11p15.5 [CytoView hg19]  TNNI2 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBITNNI2 [Mapview hg19]  TNNI2 [Mapview hg38]
OMIM191043   601680   
Gene and transcription
Genbank (Entrez)AW984315 BC032148 BI833431 BP233165 BQ926240
RefSeq transcript (Entrez)NM_001145829 NM_001145841 NM_003282
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_011621 NT_009237 NW_001838017 NW_004929378
Consensus coding sequences : CCDS (NCBI)TNNI2
Cluster EST : UnigeneHs.523403 [ NCBI ]
CGAP (NCI)Hs.523403
Alternative Splicing : Fast-db (Paris)GSHG0004531
Alternative Splicing GalleryENSG00000130598
Gene ExpressionTNNI2 [ NCBI-GEO ]     TNNI2 [ SEEK ]   TNNI2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48788 (Uniprot)
NextProtP48788  [Medical]
With graphics : InterProP48788
Splice isoforms : SwissVarP48788 (Swissvar)
Domains : Interpro (EBI)Troponin   
Related proteins : CluSTrP48788
Domain families : Pfam (Sanger)Troponin (PF00992)   
Domain families : Pfam (NCBI)pfam00992   
DMDM Disease mutations7136
Blocks (Seattle)P48788
PDB (SRS)2MKP   
PDB (PDBSum)2MKP   
PDB (IMB)2MKP   
PDB (RSDB)2MKP   
Human Protein AtlasENSG00000130598
Peptide AtlasP48788
HPRD01843
IPIIPI00216236   IPI00657955   
Protein Interaction databases
DIP (DOE-UCLA)P48788
IntAct (EBI)P48788
FunCoupENSG00000130598
BioGRIDTNNI2
IntegromeDBTNNI2
STRING (EMBL)TNNI2
Ontologies - Pathways
QuickGOP48788
Ontology : AmiGOskeletal muscle contraction  actin binding  protein binding  nucleus  cytosol  troponin complex  muscle filament sliding  troponin T binding  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIskeletal muscle contraction  actin binding  protein binding  nucleus  cytosol  troponin complex  muscle filament sliding  troponin T binding  positive regulation of transcription, DNA-templated  
Protein Interaction DatabaseTNNI2
DoCM (Curated mutations)TNNI2
Wikipedia pathwaysTNNI2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTNNI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNNI2
dbVarTNNI2
ClinVarTNNI2
1000_GenomesTNNI2 
Exome Variant ServerTNNI2
SNP (GeneSNP Utah)TNNI2
SNP : HGBaseTNNI2
Genetic variants : HAPMAPTNNI2
Genomic Variants (DGV)TNNI2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000130598 
Somatic Mutations in Cancer : COSMICTNNI2 
CONAN: Copy Number AnalysisTNNI2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:1860719-1862910
Mutations and Diseases : HGMDTNNI2
OMIM191043    601680   
MedgenTNNI2
NextProtP48788 [Medical]
GENETestsTNNI2
Disease Genetic AssociationTNNI2
Huge Navigator TNNI2 [HugePedia]  TNNI2 [HugeCancerGEM]
snp3D : Map Gene to Disease7136
DGIdb (Drug Gene Interaction db)TNNI2
General knowledge
Homologs : HomoloGeneTNNI2
Homology/Alignments : Family Browser (UCSC)TNNI2
Phylogenetic Trees/Animal Genes : TreeFamTNNI2
Chemical/Protein Interactions : CTD7136
Chemical/Pharm GKB GenePA36635
Clinical trialTNNI2
Cancer Resource (Charite)ENSG00000130598
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
CoreMineTNNI2
GoPubMedTNNI2
iHOPTNNI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 19:07:22 CET 2015
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