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TNNI2 (troponin I type 2 (skeletal, fast))

Identity

Other namesAMCD2B
DA2B
FSSV
fsTnI
HGNC (Hugo) TNNI2
LocusID (NCBI) 7136
Location 11p15.5
Location_base_pair Starts at 1860719 and ends at 1862910 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNNI2   11946
Cards
Entrez_Gene (NCBI)TNNI2  7136  troponin I type 2 (skeletal, fast)
GeneCards (Weizmann)TNNI2
Ensembl (Hinxton)ENSG00000130598 [Gene_View]  chr11:1860719-1862910 [Contig_View]  TNNI2 [Vega]
ICGC DataPortalENSG00000130598
cBioPortalTNNI2
AceView (NCBI)TNNI2
Genatlas (Paris)TNNI2
WikiGenes7136
SOURCE (Princeton)NM_001145829 NM_001145841 NM_003282
Genomic and cartography
GoldenPath (UCSC)TNNI2  -  11p15.5   chr11:1860719-1862910 +  11p15.5   [Description]    (hg19-Feb_2009)
EnsemblTNNI2 - 11p15.5 [CytoView]
Mapping of homologs : NCBITNNI2 [Mapview]
OMIM191043   601680   
Gene and transcription
Genbank (Entrez)AW984315 BC032148 BI833431 BP233165 BQ926240
RefSeq transcript (Entrez)NM_001145829 NM_001145841 NM_003282
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_011621 NT_009237 NW_001838017 NW_004929378
Consensus coding sequences : CCDS (NCBI)TNNI2
Cluster EST : UnigeneHs.523403 [ NCBI ]
CGAP (NCI)Hs.523403
Alternative Splicing : Fast-db (Paris)GSHG0004531
Alternative Splicing GalleryENSG00000130598
Gene ExpressionTNNI2 [ NCBI-GEO ]     TNNI2 [ SEEK ]   TNNI2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48788 (Uniprot)
NextProtP48788  [Medical]
With graphics : InterProP48788
Splice isoforms : SwissVarP48788 (Swissvar)
Domains : Interpro (EBI)Troponin [organisation]  
Related proteins : CluSTrP48788
Domain families : Pfam (Sanger)Troponin (PF00992)   
Domain families : Pfam (NCBI)pfam00992   
DMDM Disease mutations7136
Blocks (Seattle)P48788
PDB (SRS)2MKP   
PDB (PDBSum)2MKP   
PDB (IMB)2MKP   
PDB (RSDB)2MKP   
Human Protein AtlasENSG00000130598 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP48788
HPRD01843
IPIIPI00216236   IPI00657955   
Protein Interaction databases
DIP (DOE-UCLA)P48788
IntAct (EBI)P48788
FunCoupENSG00000130598
BioGRIDTNNI2
InParanoidP48788
Interologous Interaction database P48788
IntegromeDBTNNI2
STRING (EMBL)TNNI2
Ontologies - Pathways
Ontology : AmiGOskeletal muscle contraction  actin binding  protein binding  nucleus  cytosol  troponin complex  muscle filament sliding  troponin T binding  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIskeletal muscle contraction  actin binding  protein binding  nucleus  cytosol  troponin complex  muscle filament sliding  troponin T binding  positive regulation of transcription, DNA-templated  
Protein Interaction DatabaseTNNI2
Wikipedia pathwaysTNNI2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TNNI2
snp3D : Map Gene to Disease7136
SNP (GeneSNP Utah)TNNI2
SNP : HGBaseTNNI2
Genetic variants : HAPMAPTNNI2
Exome VariantTNNI2
1000_GenomesTNNI2 
ICGC programENSG00000130598 
Somatic Mutations in Cancer : COSMICTNNI2 
CONAN: Copy Number AnalysisTNNI2 
Mutations and Diseases : HGMDTNNI2
Genomic VariantsTNNI2  TNNI2 [DGVbeta]
dbVarTNNI2
ClinVarTNNI2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM191043    601680   
MedgenTNNI2
GENETestsTNNI2
Disease Genetic AssociationTNNI2
Huge Navigator TNNI2 [HugePedia]  TNNI2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTNNI2
Homology/Alignments : Family Browser (UCSC)TNNI2
Phylogenetic Trees/Animal Genes : TreeFamTNNI2
Chemical/Protein Interactions : CTD7136
Chemical/Pharm GKB GenePA36635
Clinical trialTNNI2
Cancer Resource (Charite)ENSG00000130598
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
CoreMineTNNI2
iHOPTNNI2
OncoSearchTNNI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:19:17 CEST 2014

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